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SCNpilot_expt_1000_bf_scaffold_4850

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4850_1
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..372
DNA (372bp) protein (124aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EHB5_9RHIZ
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CCV04019.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_4850_2
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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764..3094
DNA (2331bp) protein (777aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobiu
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Rhizobium loti RepID=Q8KJH4_RHILI
SCNpilot_expt_1000_bf_scaffold_4850_3
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3099..4148)
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037FE522 rbh
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESY71783.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
putative D-ribose-binding periplasmic protein
SCNpilot_expt_1000_bf_scaffold_4850_4
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4440..5819)
DNA (1380bp) protein (460aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037796F7 rbh
Transcriptional regulator/sugar kinase {ECO:0000313|EMBL:CDX35855.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
transcriptional regulator/sugar kinase
SCNpilot_expt_1000_bf_scaffold_4850_5
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6277..6750
DNA (474bp) protein (158aa)
inosose dehydratase; K03335 inosose dehydratase [EC:4.2.1.44]
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000379B402
Xylose isomerase {ECO:0000313|EMBL:EPE96096.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_4850_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6886..7887
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00036C8DBB rbh
Sugar ABC transporter periplasmic protein {ECO:0000313|EMBL:CDX35849.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
sugar ABC transporter periplasmic protein; K10439 ribose transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4850_7
Loktanella cinnabarina, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8042..9622
DNA (1581bp) protein (527aa)
ABC transporter; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003650397 rbh
Ribose ABC transport system, ATP-binding protein RbsA {ECO:0000313|EMBL:GAD57262.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;"
SCNpilot_expt_1000_bf_scaffold_4850_8
Vibrio nigripulchritudo, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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9619..10812
DNA (1194bp) protein (398aa)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:CCN44380.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CCN44380.1};; TaxID=1238441 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio nigripulchritudo FTn2.;"
monosaccharide-transporting ATPase (EC:3.6.3.17); K10440 ribose transport system permease protein rbh
ABC transporter permease n=1 Tax=Rhizobium loti RepID=UPI000375BC0E rbh
SCNpilot_expt_1000_bf_scaffold_4850_9
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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10854..11270
DNA (417bp) protein (139aa)
hypothetical protein; K06152 gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3]
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000365CE7C
Uncharacterized protein {ECO:0000313|EMBL:AEB44419.1}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
SCNpilot_expt_1000_bf_scaffold_4850_10
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11260..12900
DNA (1641bp) protein (547aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003797BFF rbh
Gluconate dehydrogenase {ECO:0000313|EMBL:ESW60328.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
gluconate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_4850_11
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12903..13451)
DNA (549bp) protein (183aa)
UPI0003CF5603 related cluster n=1 Tax=unknown RepID=UPI0003CF5603 rbh
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
molybdenum cofactor biosynthesis protein B; K03638 molybdenum cofactor biosynthesis protein B rbh
SCNpilot_expt_1000_bf_scaffold_4850_12
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13572..14450)
DNA (879bp) protein (293aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F7M8_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_4850_13
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14477..14662)
DNA (186bp) protein (62aa)
Msl7423 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q986C5_RHILO
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EHH11713.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
SCNpilot_expt_1000_bf_scaffold_4850_14
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14841..15863)
DNA (1023bp) protein (341aa)
Peptidase S49 n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YCW9_MESOW rbh
peptidase S49 rbh
Peptidase S49 {ECO:0000313|EMBL:ESY69886.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_expt_1000_bf_scaffold_4850_15
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15910..16707)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EGS7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CCV03582.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
putative O-methyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_4850_16
unknown

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17270..17356
DNA (87bp) protein (29aa)

This feature has no annotations

Displaying 16 items

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