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SCNpilot_expt_1000_bf_scaffold_7320

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7320_1
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..683
DNA (681bp) protein (227aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
ATP synthase F0F1 subunit beta (EC:3.6.3.14); K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14]
F0F1 ATP synthase subunit beta n=3 Tax=Mesorhizobium RepID=V7G047_9RHIZ
SCNpilot_expt_1000_bf_scaffold_7320_2
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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785..1192
DNA (408bp) protein (136aa)
atpC; ATP synthase F0F1 subunit epsilon (EC:3.6.3.14); K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]
F0F1 ATP synthase subunit epsilon n=5 Tax=Mesorhizobium RepID=V7F3B1_9RHIZ
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
SCNpilot_expt_1000_bf_scaffold_7320_3
Mesorhizobium sp. LSJC277A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1279..2256
DNA (978bp) protein (326aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1287334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC277A00.;"
signal peptidase I; K03100 signal peptidase I [EC:3.4.21.89]
UPI0003CEE13E related cluster n=1 Tax=unknown RepID=UPI0003CEE13E rbh
SCNpilot_expt_1000_bf_scaffold_7320_4
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2285..3286)
DNA (1002bp) protein (334aa)
Mannitol 2-dehydrogenase {ECO:0000313|EMBL:CDX52250.1}; EC=1.1.1.67 {ECO:0000313|EMBL:CDX52250.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
mannitol dehydrogenase domain; K00040 fructuronate reductase [EC:1.1.1.57] rbh
Mannitol dehydrogenase domain protein (Fragment) n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YL77_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_7320_5
Mesorhizobium sp. LSJC285A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3315..3752)
DNA (438bp) protein (146aa)
mannitol dehydrogenase; K00045 mannitol 2-dehydrogenase [EC:1.1.1.67]
UPI0003CF0A0D related cluster n=1 Tax=unknown RepID=UPI0003CF0A0D
Dioxygenase {ECO:0000313|EMBL:ESW86561.1}; TaxID=1287338 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC285A00.;"
SCNpilot_expt_1000_bf_scaffold_7320_6
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4014..5423
DNA (1410bp) protein (470aa)
glucuronate isomerase (EC:5.3.1.12); K01812 glucuronate isomerase [EC:5.3.1.12] rbh
Uronate isomerase {ECO:0000255|HAMAP-Rule:MF_00675}; EC=5.3.1.12 {ECO:0000255|HAMAP-Rule:MF_00675};; Glucuronate isomerase {ECO:0000255|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000255|HAMAP-Rule:MF_00675}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
Uronate isomerase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=UXAC_RHILO rbh
SCNpilot_expt_1000_bf_scaffold_7320_7
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5493..6278
DNA (786bp) protein (262aa)
2-deoxy-D-gluconate 3-dehydrogenase {ECO:0000313|EMBL:CCV10864.1}; EC=1.1.1.125 {ECO:0000313|EMBL:CCV10864.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
2-deoxy-D-gluconate 3-dehydrogenase (EC:1.1.1.125) rbh
2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FFU4_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_7320_8
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6575..8068
DNA (1494bp) protein (498aa)
ATP-dependent DNA helicase {ECO:0000313|EMBL:CCV04696.1}; EC=3.6.1.- {ECO:0000313|EMBL:CCV04696.1};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
DEAD/DEAH box helicase; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12] rbh
ATP-dependent DNA helicase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EYP2_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_7320_9
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8100..8396
DNA (297bp) protein (99aa)
ATP-dependent DNA helicase {ECO:0000313|EMBL:CCV10868.1}; EC=3.6.1.- {ECO:0000313|EMBL:CCV10868.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
ATP-dependent DNA helicase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F429_9RHIZ
ATP-dependent DNA helicase RecQ
SCNpilot_expt_1000_bf_scaffold_7320_10
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8575..10104
DNA (1530bp) protein (510aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y421_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CDX45266.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7320_11
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10708..10872
DNA (165bp) protein (55aa)
YCII-related protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TPA3_TISMK
hypothetical protein
YCII-related protein {ECO:0000313|EMBL:AFK54591.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_7320_12
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10922..11911
DNA (990bp) protein (330aa)
Putative RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GT26_SPHAL
RNA polymerase ECF-subfamily sigma factor
Putative RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABF53196.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_1000_bf_scaffold_7320_13
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11908..12162
DNA (255bp) protein (85aa)
UPI0003CF4726 related cluster n=1 Tax=unknown RepID=UPI0003CF4726
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
RNA polymerase ECF-subfamily sigma factor
SCNpilot_expt_1000_bf_scaffold_7320_14
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12594..13406
DNA (813bp) protein (271aa)
ROK family protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TBS8_MESCW rbh
ROK family protein rbh
ROK family protein {ECO:0000313|EMBL:ADV12003.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_7320_15
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13551..14189
DNA (639bp) protein (213aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TBS9_MESCW rbh
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADV12004.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_7320_16
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14189..14857
DNA (669bp) protein (223aa)
ABC transporter; K10831 taurine transport system ATP-binding protein [EC:3.6.3.36] rbh
ABC transporter related protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TBT0_MESCW rbh
ABC transporter related protein {ECO:0000313|EMBL:ADV12005.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
Displaying 16 items

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