ggKbase home page

SCNpilot_expt_1000_bf_scaffold_6042

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6042_1
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..517)
DNA (516bp) protein (172aa)
Amidase, hydantoinase/carbamoylase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A7P6_RHIFH
Uncharacterized protein {ECO:0000313|EMBL:KEC77595.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
amaB; amidase, hydantoinase/carbamoylase
SCNpilot_expt_1000_bf_scaffold_6042_2
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(514..1710)
DNA (1197bp) protein (399aa)
dpaL; diaminopropionate ammonia-lyase; K01751 diaminopropionate ammonia-lyase [EC:4.3.1.15] rbh
Diaminopropionate ammonia-lyase {ECO:0000313|EMBL:CCE96275.1}; EC=4.3.1.15 {ECO:0000313|EMBL:CCE96275.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
diaminopropionate ammonia-lyase n=1 Tax=Kaistia granuli RepID=UPI00037BE1C2
SCNpilot_expt_1000_bf_scaffold_6042_3
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1821..2312
DNA (492bp) protein (164aa)
Transcription regulator AsnC-type-like protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TKI6_MESCW
transcriptional regulator AsnC-type-like protein
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:AEH89605.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_6042_4
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2350..3492)
DNA (1143bp) protein (381aa)
Flavoprotein reductase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YCL8_9RHIZ rbh
Flavoprotein reductase {ECO:0000313|EMBL:EHH10340.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
flavoprotein reductase
SCNpilot_expt_1000_bf_scaffold_6042_5
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3611..4276)
DNA (666bp) protein (222aa)
Peroxiredoxin n=1 Tax=Rhizobium sp. CF142 RepID=J1STU3_9RHIZ rbh
Peroxiredoxin {ECO:0000313|EMBL:EJJ28673.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
antioxidant protein rbh
SCNpilot_expt_1000_bf_scaffold_6042_6
unknown

Not on your lists

comp(4327..4791)
DNA (465bp) protein (155aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6042_7
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5163..6152
DNA (990bp) protein (330aa)
DNA-binding transcriptional activator of the SARP family n=1 Tax=Rhizobium sp. CF142 RepID=J2L6L1_9RHIZ
DNA-binding transcriptional activator of the SARP family {ECO:0000313|EMBL:EJJ28674.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
regulatory protein
SCNpilot_expt_1000_bf_scaffold_6042_8
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6321..6779
DNA (459bp) protein (153aa)
Tiorf43 protein n=1 Tax=Rhizobium radiobacter RepID=Q9R6L6_RHIRD
Transcriptional regulator {ECO:0000313|EMBL:KKC31163.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
HTH-Family Transcriptional Regulator
SCNpilot_expt_1000_bf_scaffold_6042_9
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6776..7375
DNA (600bp) protein (200aa)
Uncharacterized protein n=2 Tax=Rhizobium radiobacter RepID=M8AA81_RHIRD
Cell division protein Fic {ECO:0000313|EMBL:KKC31161.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
fic; cell filamentation protein
SCNpilot_expt_1000_bf_scaffold_6042_10
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7481..8611
DNA (1131bp) protein (377aa)
lysine 2,3-aminomutase YodO family protein (EC:5.4.3.2) rbh
Lysine 2,3-aminomutase YodO family protein {ECO:0000313|EMBL:ADV11976.1}; EC=5.4.3.2 {ECO:0000313|EMBL:ADV11976.1};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
Lysine 2,3-aminomutase YodO family protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TAU6_MESCW rbh
SCNpilot_expt_1000_bf_scaffold_6042_11
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8584..9543)
DNA (960bp) protein (320aa)
Putative integral membrane protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X1G3_RHIFR rbh
Membrane protein {ECO:0000313|EMBL:KDP75247.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_6042_12
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9658..10230)
DNA (573bp) protein (191aa)
Regulatory protein TetR n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X1G2_RHIFR rbh
Uncharacterized protein {ECO:0000313|EMBL:KDP75249.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
tetR1; regulatory protein TetR rbh
SCNpilot_expt_1000_bf_scaffold_6042_13
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10390..10509
DNA (120bp) protein (40aa)
UPI0003CE8786 related cluster n=1 Tax=unknown RepID=UPI0003CE8786
BA14K-like protein
Uncharacterized protein {ECO:0000313|EMBL:ESY89600.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
Displaying 13 items

View Taxonomy