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SCNpilot_expt_1000_bf_scaffold_6050

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6050_1
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..554)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003754726
Permease component of ABC-type sugar transporter {ECO:0000313|EMBL:AKI02659.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
ABC transporter permease; K02025 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_6050_2
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(574..1839)
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000378DE0E
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM32712.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
putative ABC transporter substrate binding protein; K02027 multiple sugar transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_6050_3
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1876..2613)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000303515C rbh
Uncharacterized protein {ECO:0000313|EMBL:EXL02346.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6050_4
unknown

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3053..3298
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6050_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3386..4879)
DNA (1494bp) protein (498aa)
Xylulose kinase XylB {ECO:0000313|EMBL:EYR84479.1}; EC=2.7.1.17 {ECO:0000313|EMBL:EYR84479.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
xylB; xylulose kinase; K00854 xylulokinase [EC:2.7.1.17] rbh
Xylulose kinase XylB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CG77_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_6050_6
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4955..5710)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000372A07A
Putative transcriptional regulator of N-acetylglucosamine utilization, GntR family {ECO:0000313|EMBL:KFC71116.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
HTH-type transcriptional repressor, GntR family; K03710 GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6050_7
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6016..8700
DNA (2685bp) protein (895aa)
Fused DNA polymerase I 5'->3' exonuclease 3'->5' polymerase 3'->5' exonuclease {ECO:0000313|EMBL:CCV16270.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CCV16270.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7]
Fused DNA polymerase I 5'->3' exonuclease 3'->5' polymerase 3'->5' exonuclease n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FIN7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6050_8
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8871..9455
DNA (585bp) protein (195aa)
Lysine exporter protein LysE/YggA n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y4Y4_9RHIZ
Lysine exporter protein LysE/YggA {ECO:0000313|EMBL:CDX39175.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Lysine exporter protein (LYSE/YGGA)
SCNpilot_expt_1000_bf_scaffold_6050_9
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9502..9906)
DNA (405bp) protein (135aa)
Transcriptional regulator (Fur family) n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F0E8_9RHIZ
FUR family transcriptional regulator {ECO:0000313|EMBL:CDX43820.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
FUR family transcriptional regulator; K09823 Fur family transcriptional regulator, zinc uptake regulator
SCNpilot_expt_1000_bf_scaffold_6050_10
Mesorhizobium sp. L2C085B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10059..11006)
DNA (948bp) protein (316aa)
UPI0003CF6E2D related cluster n=1 Tax=unknown RepID=UPI0003CF6E2D
L-glyceraldehyde 3-phosphate reductase {ECO:0000313|EMBL:ESZ15569.1}; TaxID=1287117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C085B000.;"
hypothetical protein
Displaying 10 items

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