ggKbase home page

SCNpilot_expt_1000_bf_scaffold_6228

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6228_1
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..428)
DNA (426bp) protein (142aa)
High-affinity branched-chain amino acid transport system permease protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V4Y7_9RHIZ
High-affinity branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:ENN88201.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
branched-chain amino acid ABC-type transport system, permease component
SCNpilot_expt_1000_bf_scaffold_6228_2
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(371..829)
DNA (459bp) protein (153aa)
UPI0003CE6D22 related cluster n=1 Tax=unknown RepID=UPI0003CE6D22
branched-chain amino acid ABC-type transport system, permease component
ABC transporter permease {ECO:0000313|EMBL:ESY86768.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
SCNpilot_expt_1000_bf_scaffold_6228_3
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(826..1572)
DNA (747bp) protein (249aa)
ABC transporter ATP-binding protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HC54_9RHIZ rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EPE96297.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
ABC-type branched-chain amino acid transport systems, ATPase component
SCNpilot_expt_1000_bf_scaffold_6228_4
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1569..2378)
DNA (810bp) protein (270aa)
Branched-chain amino acid ABC transporter ATPase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FQP9_9RHIZ rbh
Branched-chain amino acid ABC transporter ATPase {ECO:0000313|EMBL:ESX82973.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_6228_5
Mesorhizobium sp. LSHC426A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2502..3239
DNA (738bp) protein (246aa)
UPI0003CEC24D related cluster n=1 Tax=unknown RepID=UPI0003CEC24D rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:ESX52322.1}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_6228_6
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3236..3724
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U6I0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN88204.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6228_7
Mesorhizobium sp. LSJC264A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3726..4073
DNA (348bp) protein (116aa)
Uncharacterized protein n=3 Tax=Mesorhizobium RepID=V7F4Y8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX27231.1}; TaxID=1287321 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC264A00.;"
TIGR04076 family protein
SCNpilot_expt_1000_bf_scaffold_6228_8
Mesorhizobium sp. LNJC394B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4075..5010
DNA (936bp) protein (312aa)
Aldo/keto reductase n=1 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7FX03_9RHIZ
Aldo/keto reductase {ECO:0000313|EMBL:ESY17546.1}; TaxID=1287274 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC394B00.;"
aldo/keto reductase
SCNpilot_expt_1000_bf_scaffold_6228_9
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5114..5548
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IAJ9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE96303.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6228_10
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5576..6838
DNA (1263bp) protein (421aa)
Amino acid ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FT77_9RHIZ
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESX82979.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_6228_11
Pestalotiopsis fici, Pestalotiopsis, Xylariales, Xylariomycetidae, Ascomycota, Fungi

Not on your lists

6963..8009
DNA (1047bp) protein (349aa)
prdF; proline racemase; K01777 proline racemase [EC:5.1.1.4]
proline racemase n=1 Tax=Streptomyces violaceoniger RepID=UPI0003C7735D
Uncharacterized protein {ECO:0000313|EMBL:ETS86256.1}; TaxID=1229662 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Xylariomycetidae; Xylariales; Amphisphaeriaceae; Pestalotiopsis.;" source="Pestalotiopsis fici W106-1.;"
SCNpilot_expt_1000_bf_scaffold_6228_12
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8053..9222
DNA (1170bp) protein (390aa)
class I and II aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1] rbh
aspartate aminotransferase n=1 Tax=Ochrobactrum anthropi RepID=UPI000289878B rbh
Aspartate aminotransferase {ECO:0000313|EMBL:EXL04816.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_expt_1000_bf_scaffold_6228_13
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9293..11797)
DNA (2505bp) protein (835aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000361F61A rbh
Cell division protein FtsK/SpoIIIE {ECO:0000313|EMBL:CDX19168.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
cell division protein FtsK/SpoIIIE; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family rbh
SCNpilot_expt_1000_bf_scaffold_6228_14
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12099..12815)
DNA (717bp) protein (239aa)
Transcriptional regulator (TetR family) n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EI30_9RHIZ rbh
Transcriptional regulator (TetR family) {ECO:0000313|EMBL:CCV03880.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
TetR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_6228_15
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12953..14131
DNA (1179bp) protein (393aa)
UPI0003CFFD18 related cluster n=1 Tax=unknown RepID=UPI0003CFFD18 rbh
Hemolysin D {ECO:0000313|EMBL:ESZ13667.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
secretion protein HlyD family protein; K03543 multidrug resistance protein A rbh
SCNpilot_expt_1000_bf_scaffold_6228_16
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14146..15717
DNA (1572bp) protein (524aa)
UPI0003CF7022 related cluster n=1 Tax=unknown RepID=UPI0003CF7022 rbh
MFS transporter {ECO:0000313|EMBL:ESW83590.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
EmrB/QacA subfamily drug resistance transporter rbh
SCNpilot_expt_1000_bf_scaffold_6228_17
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15869..16372)
DNA (504bp) protein (168aa)
Methionine sulfoxide reductase B {ECO:0000313|EMBL:CDX37547.1}; EC=1.8.4.12 {ECO:0000313|EMBL:CDX37547.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
methionine sulfoxide reductase B (EC:1.8.4.11); K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
UPI0003CFBC60 related cluster n=1 Tax=unknown RepID=UPI0003CFBC60 rbh
SCNpilot_expt_1000_bf_scaffold_6228_18
Mesorhizobium sp. LNJC372A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16530..17018)
DNA (489bp) protein (163aa)
Fasciclin n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HMI4_9RHIZ
beta-Ig-H3/fasciclin
Fasciclin {ECO:0000313|EMBL:ESY56724.1}; TaxID=1287256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC372A00.;"
Displaying 18 items

View Taxonomy