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SCNpilot_expt_1000_bf_scaffold_12312

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_12312_1
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..465)
DNA (465bp) protein (155aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Phyllobacterium sp. YR531 RepID=J2W2G2_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:KFI32472.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
inner membrane amino-acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_12312_2
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(521..793)
DNA (273bp) protein (91aa)
Amino acid ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JMT3_AGRRK
amino acid ABC transporter
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAJ92113.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_12312_3

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979..1587
DNA (609bp) protein (203aa)
TnpR, resolvase n=2 Tax=Bacteria RepID=E8PRW8_9BACT
TnpR, resolvase {ECO:0000313|EMBL:ADU90873.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Resolvase domain protein
SCNpilot_expt_1000_bf_scaffold_12312_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1587..4556
DNA (2970bp) protein (990aa)
TnpA, transposase n=2 Tax=Bacteria RepID=E8PS46_9BACT rbh
Transposase Tn3 family protein {ECO:0000313|EMBL:EGP54408.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
tnpA; transposase rbh
SCNpilot_expt_1000_bf_scaffold_12312_5
unknown

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4624..5130
DNA (507bp) protein (169aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_12312_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5364..5675
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFA7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78507.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_12312_7
bacterium YEK0313, Bacteria

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5764..5994
DNA (231bp) protein (77aa)
Ntp pyrophosphohydrolase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CE13_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CEJ12662.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_12312_8
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6475..7164)
DNA (690bp) protein (230aa)
Putative histidine kinase n=1 Tax=Pseudomonas aeruginosa 39016 RepID=E3A3I6_PSEAI
Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI76123.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
SCNpilot_expt_1000_bf_scaffold_12312_9
unknown

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comp(7648..8007)
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_12312_10
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8183..8443
DNA (261bp) protein (87aa)
hypothetical protein; K01971 DNA ligase (ATP) [EC:6.5.1.1]
Putative ATP-dependent DNA ligase protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PP31_9RHIZ
Putative ATP-dependent DNA ligase protein {ECO:0000313|EMBL:CCM78346.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
Displaying 10 items

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