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SCNpilot_expt_1000_bf_scaffold_2258

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2258_1
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..325
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000318B266
Uncharacterized protein {ECO:0000313|EMBL:KJV34639.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2258_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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388..1020
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NI37_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89338.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_2258_3
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1186..2127
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VR54_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAN45501.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2258_4
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2164..3480
DNA (1317bp) protein (439aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
TrmA family RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037153B4
SCNpilot_expt_1000_bf_scaffold_2258_5

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3553..4572
DNA (1020bp) protein (340aa)
beta-glucosidase-like glycosyl hydrolase; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000369C0AC
Glycoside hydrolase family 3 domain protein {ECO:0000313|EMBL:EQD59782.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
SCNpilot_expt_1000_bf_scaffold_2258_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4569..5120
DNA (552bp) protein (184aa)
Hypoxanthine-guanine phosphoribosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEV1_9GAMM
hypoxanthine-guanine phosphoribosyltransferase
Hypoxanthine-guanine phosphoribosyltransferase {ECO:0000313|EMBL:AGG89334.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_2258_7
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5127..5882
DNA (756bp) protein (252aa)
Probable S-methyl-5'-thioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.44 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
5'-deoxy-5'-methylthioadenosine phosphorylase; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
5''''-methylthioadenosine phosphorylase n=1 Tax=Dyella japonica RepID=UPI0002FABEE9
SCNpilot_expt_1000_bf_scaffold_2258_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

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5994..6218
DNA (225bp) protein (75aa)
Cold-shock DNA-binding domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWY8_9BURK
cspD; Cold shock protein CspD
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_2258_9
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6233..7678)
DNA (1446bp) protein (482aa)
Aldehyde dehydrogenase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W120_9GAMM
Aldehyde dehydrogenase {ECO:0000313|EMBL:KGI77445.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
NAD-dependent aldehyde dehydrogenase
SCNpilot_expt_1000_bf_scaffold_2258_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7788..9146)
DNA (1359bp) protein (453aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Exodeoxyribonuclease VII large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WEY6_9GAMM
SCNpilot_expt_1000_bf_scaffold_2258_11
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9136..10623)
DNA (1488bp) protein (496aa)
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WG15_9GAMM
Phospholipase {ECO:0000313|EMBL:AHX13591.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase
SCNpilot_expt_1000_bf_scaffold_2258_12

Not on your lists

10821..12386
DNA (1566bp) protein (522aa)
Uncharacterized protein (Fragment) n=2 Tax=mine drainage metagenome RepID=T1A6Z0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD36654.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
type IV pilus assembly PilZ
SCNpilot_expt_1000_bf_scaffold_2258_13
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12401..12604
DNA (204bp) protein (68aa)
Uncharacterized protein n=2 Tax=Paenibacillus mucilaginosus RepID=F8F546_PAEMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFC29377.1}; TaxID=1116391 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus 3016.;"
SCNpilot_expt_1000_bf_scaffold_2258_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12601..13398
DNA (798bp) protein (266aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
3-deoxy-D-manno-octulosonate cytidylyltransferase; K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI000344DB94
SCNpilot_expt_1000_bf_scaffold_2258_15
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13395..13889
DNA (495bp) protein (165aa)
ptpA; protein-tyrosine phosphatase (EC:3.1.3.48); K01104 protein-tyrosine phosphatase [EC:3.1.3.48]
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E67AA8
Uncharacterized protein {ECO:0000313|EMBL:KGI78336.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
SCNpilot_expt_1000_bf_scaffold_2258_16

Not on your lists

14041..15348
DNA (1308bp) protein (436aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=mine drainage metagenome RepID=T0ZR54_9ZZZZ
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:EQD47108.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
NHL repeat containing protein
SCNpilot_expt_1000_bf_scaffold_2258_17
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15453..17273
DNA (1821bp) protein (607aa)
excinuclease ABC subunit C n=1 Tax=Dyella japonica RepID=UPI0002E701AF
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
Excinuclease ABC subunit C
SCNpilot_expt_1000_bf_scaffold_2258_18
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17326..17943
DNA (618bp) protein (206aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIN7_9GAMM
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:KGI78334.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
Displaying 18 items

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