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SCNpilot_expt_1000_bf_scaffold_2274

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2274_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(245..817)
DNA (573bp) protein (191aa)
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZG7_9GAMM
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein {ECO:0000313|EMBL:EIL92608.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein
SCNpilot_expt_1000_bf_scaffold_2274_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(817..1338)
DNA (522bp) protein (174aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Signal transduction histidine kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4NBS2_9GAMM
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_2274_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1662..1949
DNA (288bp) protein (96aa)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_2274_4
unknown

Not on your lists

comp(2193..2294)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2274_5
Azotobacter chroococcum, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2302..3054)
DNA (753bp) protein (251aa)
Oxidoreductase n=1 Tax=Pseudomonas aeruginosa VRFPA08 RepID=V8DSN5_PSEAI rbh
Plasmid pAcX50f, complete sequence {ECO:0000313|EMBL:AJE23930.1}; TaxID=1328314 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter chroococcum NCIMB 8003.;"
oxidoreductase, short-chain dehydrogenase/reductase family rbh
SCNpilot_expt_1000_bf_scaffold_2274_6
Cohnella sp. VKM B-2846, Cohnella, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3106..3957)
DNA (852bp) protein (284aa)
methylglyoxal reductase (NADPH-dependent) (EC:1.1.1.283) rbh
2,5-diketo-D-gluconic acid reductase n=1 Tax=Pedobacter agri RepID=UPI00029A0FA8 rbh
2,5-diketo-D-gluconic acid reductase {ECO:0000313|EMBL:KIL35060.1}; TaxID=1590652 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Cohnella.;" source="Cohnella sp. VKM B-2846.;"
SCNpilot_expt_1000_bf_scaffold_2274_7
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4283..4750)
DNA (468bp) protein (156aa)
cupin n=1 Tax=Methylocystis rosea RepID=UPI0003607AA9
cupin 2 barrel domain-containing protein
Cupin 2 barrel domain-containing protein {ECO:0000313|EMBL:BAM87465.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_2274_8
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4816..5208)
DNA (393bp) protein (131aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T132_ACIDE
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:EER61776.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2274_9
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5241..6032)
DNA (792bp) protein (264aa)
Carboxymuconolactone decarboxylase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T131_ACIDE rbh
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:EER61775.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2274_10
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6010..6516)
DNA (507bp) protein (169aa)
4-carboxymuconolactone decarboxylase (EC:4.1.1.44)
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:CCH07540.1}; EC=4.1.1.44 {ECO:0000313|EMBL:CCH07540.1};; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
Cupin 2, conserved barrel domain protein n=1 Tax=Burkholderia multivorans CGD2M RepID=B9CEP6_9BURK
SCNpilot_expt_1000_bf_scaffold_2274_11
blood disease bacterium R229, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6662..7555
DNA (894bp) protein (298aa)
Putative transcriptional regulator, LysR family n=1 Tax=blood disease bacterium R229 RepID=G2ZT08_9RALS rbh
Putative transcriptional regulator, LysR family {ECO:0000313|EMBL:CCA82171.1}; TaxID=741978 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="blood disease bacterium R229.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_2274_12
Rhodococcus sp. Chr-9, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7625..8206)
DNA (582bp) protein (194aa)
membrane protein n=1 Tax=Rhodococcus sp. R1101 RepID=UPI0002D73F3D
Membrane protein {ECO:0000313|EMBL:KHJ74102.1}; TaxID=713612 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. Chr-9.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2274_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8267..9856)
DNA (1590bp) protein (530aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037F6CB1 rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL97732.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2274_14
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10125..10577)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000370DBF8
Uncharacterized protein {ECO:0000313|EMBL:AJZ61965.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2274_15
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10805..11887
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IHV7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF82099.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2274_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11689..13257)
DNA (1569bp) protein (523aa)
CBS domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NH15_9GAMM
CBS domain-containing protein
CBS domain-containing protein {ECO:0000313|EMBL:AGG90189.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_2274_17
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13368..13997
DNA (630bp) protein (210aa)
Pit accessory protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKM0_9GAMM
Pit accessory protein {ECO:0000313|EMBL:EIL87761.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
phosphate transport regulator related to PhoU
SCNpilot_expt_1000_bf_scaffold_2274_18
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14149..15273
DNA (1125bp) protein (375aa)
Phosphate/sulfate permease n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKL9_9GAMM
Inorganic phosphate transporter {ECO:0000313|EMBL:KGI77291.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
phosphate/sulfate permease
SCNpilot_expt_1000_bf_scaffold_2274_19
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15653..17521
DNA (1869bp) protein (623aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000311F8A8 rbh
Ligand-gated channel protein {ECO:0000313|EMBL:AHX14531.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
btuB; TonB-dependent vitamin B12 receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_2274_20
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17548..18819
DNA (1272bp) protein (424aa)
cobyrinic Acid a,c-diamide synthase; K02224 cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] rbh
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031D0487 rbh
Cobyrinic acid a,c-diamide synthase {ECO:0000313|EMBL:KGM56582.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
SCNpilot_expt_1000_bf_scaffold_2274_21
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18816..20279
DNA (1464bp) protein (488aa)
cobyric acid synthase; K02232 adenosylcobyric acid synthase [EC:6.3.5.10] rbh
Cobyric acid synthase n=2 Tax=Xanthomonas campestris RepID=Q4UXQ6_XANC8 rbh
Cobyric acid synthase {ECO:0000256|SAAS:SAAS00231811}; TaxID=190485 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 /; NCPPB 528 / LMG 568 / P 25).;"
SCNpilot_expt_1000_bf_scaffold_2274_22
unknown

Not on your lists

comp(20808..20972)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2274_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21305..21853
DNA (549bp) protein (183aa)
MscS mechanosensitive ion channel n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTU4_9GAMM
MscS mechanosensitive ion channel {ECO:0000313|EMBL:EIL90635.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
mechanosensitive ion channel MscS; K16053 miniconductance mechanosensitive channel
SCNpilot_expt_1000_bf_scaffold_2274_24
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23038..23841
DNA (804bp) protein (268aa)
putative NAD(P)H dehydrogenase (EC:1.6.5.2); K00355 NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] rbh
Putative NAD(P)H dehydrogenase [quinone] n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FTF1_STRMK rbh
NAD(P)H dehydrogenase {ECO:0000313|EMBL:KDP85219.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
SCNpilot_expt_1000_bf_scaffold_2274_25
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23814..24461)
DNA (648bp) protein (216aa)
Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WUX7_PSEUU
peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin
Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin {ECO:0000313|EMBL:ADV27976.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
Displaying 25 items

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