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SCNpilot_expt_1000_bf_scaffold_2479

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2479_1
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1212)
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI000374ACF7
Diguanylate cyclase {ECO:0000313|EMBL:EZP41967.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
TPR domain protein
SCNpilot_expt_1000_bf_scaffold_2479_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1471..2457)
DNA (987bp) protein (329aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
tRNA-dihydrouridine synthase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPU5_9GAMM
tRNA-U20-dihydrouridine synthase
SCNpilot_expt_1000_bf_scaffold_2479_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2531..4405
DNA (1875bp) protein (625aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00035E025B
Diguanylate cyclase {ECO:0000313|EMBL:EIL98938.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
diguanylate cyclase
SCNpilot_expt_1000_bf_scaffold_2479_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4356..4832)
DNA (477bp) protein (159aa)
Globin n=1 Tax=Rhodanobacter denitrificans RepID=I4WME8_9GAMM
truncated hemoglobin
Truncated hemoglobin {ECO:0000313|EMBL:AGG87715.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_2479_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4952..5323
DNA (372bp) protein (124aa)
Ferredoxin n=1 Tax=Rhodanobacter denitrificans RepID=I4WME6_9GAMM
ferredoxin
Ferredoxin {ECO:0000313|EMBL:EIL91832.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_1000_bf_scaffold_2479_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5412..5912
DNA (501bp) protein (167aa)
Probable thiol peroxidase {ECO:0000256|HAMAP-Rule:MF_00269}; EC=1.11.1.- {ECO:0000256|HAMAP-Rule:MF_00269};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
peroxiredoxin (EC:1.11.1.5)
Probable thiol peroxidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIE8_9GAMM
SCNpilot_expt_1000_bf_scaffold_2479_7
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6652..7662)
DNA (1011bp) protein (337aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
glyceraldehyde-3-phosphate dehydrogenase, type I; K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Dyella japonica RepID=UPI0003162A4A
SCNpilot_expt_1000_bf_scaffold_2479_8
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7782..8597
DNA (816bp) protein (272aa)
Endonuclease n=2 Tax=mine drainage metagenome RepID=T0YQ87_9ZZZZ
S1/P1 Nuclease {ECO:0000313|EMBL:GAN45683.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
S1/P1 Nuclease
SCNpilot_expt_1000_bf_scaffold_2479_9
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8726..9193)
DNA (468bp) protein (156aa)
Membrane protein containing DUF962 n=2 Tax=mine drainage metagenome RepID=T1AYV3_9ZZZZ
Membrane protein {ECO:0000313|EMBL:GAN45431.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2479_10
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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9384..9719
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Myxococcus xanthus RepID=UPI000362F466
Uncharacterized protein {ECO:0000313|EMBL:AKF86575.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2479_11
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9735..10082)
DNA (348bp) protein (116aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Rudaea cellulosilytica RepID=UPI000368B6AA
phosphoribosylaminoimidazole-succinocarboxamide synthase
SCNpilot_expt_1000_bf_scaffold_2479_12
RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10307..10555
DNA (249bp) protein (83aa)
Tax=RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated
SCNpilot_expt_1000_bf_scaffold_2479_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10721..11032
DNA (312bp) protein (104aa)
Cytochrome c553 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WFY0_9GAMM
Cytochrome c553 {ECO:0000313|EMBL:EIL98371.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cytochrome c553
SCNpilot_expt_1000_bf_scaffold_2479_14
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11029..11844
DNA (816bp) protein (272aa)
molecular chaperone DnaJ n=1 Tax=Dyella ginsengisoli RepID=UPI000348F03A
Molecular chaperone DnaJ {ECO:0000313|EMBL:GAN45427.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
protein with DnaJ-like domain
SCNpilot_expt_1000_bf_scaffold_2479_15
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12003..12407
DNA (405bp) protein (135aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
ribulose-phosphate 3-epimerase n=1 Tax=Xanthomonas vasicola RepID=UPI0001CBF9A4
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_expt_1000_bf_scaffold_2479_16
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12377..12655
DNA (279bp) protein (93aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ribulose-phosphate 3-epimerase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
Ribulose-phosphate 3-epimerase n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8I5U1_9GAMM
SCNpilot_expt_1000_bf_scaffold_2479_17
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13171..13860
DNA (690bp) protein (230aa)
Proteobacterial dedicated sortase system response regulator n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRS1_9GAMM
Chemotaxis protein CheY {ECO:0000313|EMBL:GAN45424.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
two component transcriptional regulator, winged helix family
SCNpilot_expt_1000_bf_scaffold_2479_18
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15120..16118
DNA (999bp) protein (333aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Signal transduction histidine kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN95_9GAMM
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_2479_19
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16273..17748
DNA (1476bp) protein (492aa)
Anthranilate synthase component I {ECO:0000313|EMBL:AIF46774.1}; EC=4.1.3.27 {ECO:0000313|EMBL:AIF46774.1};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
anthranilate synthase component I (EC:4.1.3.27)
Anthranilate synthase component I n=1 Tax=Rhodanobacter denitrificans RepID=I4WW49_9GAMM
SCNpilot_expt_1000_bf_scaffold_2479_20
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18096..19193)
DNA (1098bp) protein (366aa)
Putative permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVI8_9GAMM
Permease {ECO:0000313|EMBL:KGI78728.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
putative permease; K11720 lipopolysaccharide export system permease protein
SCNpilot_expt_1000_bf_scaffold_2479_21
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19205..20323)
DNA (1119bp) protein (373aa)
Putative permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNV6_9GAMM
Permease {ECO:0000313|EMBL:KGI78553.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
putative permease
SCNpilot_expt_1000_bf_scaffold_2479_22
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20397..21836
DNA (1440bp) protein (480aa)
leucyl aminopeptidase; K01255 leucyl aminopeptidase [EC:3.4.11.1]
Cytosol aminopeptidase n=1 Tax=mine drainage metagenome RepID=T1BQL6_9ZZZZ
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
SCNpilot_expt_1000_bf_scaffold_2479_23

Not on your lists

22213..24300
DNA (2088bp) protein (696aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B6BECD
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48716.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2479_24
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24320..27937)
DNA (3618bp) protein (1206aa)
Signal transduction histidine kinase n=3 Tax=Rhodanobacter denitrificans RepID=M4NJN1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGI78727.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_2479_25
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28042..28692
DNA (651bp) protein (217aa)
YceI like family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDL2_9GAMM
Polyisoprenoid-binding protein {ECO:0000313|EMBL:GAN45894.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2479_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28673..29059
DNA (387bp) protein (129aa)
Cytochrome B561 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDL3_9GAMM
Cytochrome B561 {ECO:0000313|EMBL:EIL97554.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cytochrome B561; K12262 cytochrome b561
Displaying 26 items

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