name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_2994_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3..815)
|
Amino acid/peptide transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKB6_9GAMM
Amino acid/peptide transporter {ECO:0000313|EMBL:EIL99907.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
amino acid/peptide transporter (peptide:H symporter)
|
|
SCNpilot_expt_1000_bf_scaffold_2994_2 |
Not on your lists |
comp(836..2329)
|
Amino acid/peptide transporter n=1 Tax=mine drainage metagenome RepID=T1ALP2_9ZZZZ
rbh
Amino acid/peptide transporter {ECO:0000313|EMBL:EQD41619.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
amino acid/peptide transporter (peptide:H symporter)
|
|
SCNpilot_expt_1000_bf_scaffold_2994_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2481..3335)
|
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rh
Tryptophan 2,3-dioxygenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKB4_9GAMM
tryptophan 2,3-dioxygenase (vermilion)
|
|
SCNpilot_expt_1000_bf_scaffold_2994_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3891..4976
|
Pyruvate dehydrogenase E1 alpha subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKB3_9GAMM
Pyruvate dehydrogenase E1 alpha subunit {ECO:0000313|EMBL:EIL99904.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
pyruvate dehydrogenase E1 component, alpha subunit
|
|
SCNpilot_expt_1000_bf_scaffold_2994_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5188..6168
|
2-oxoisovalerate dehydrogenase subunit beta n=1 Tax=Dyella ginsengisoli RepID=UPI00034665D3
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit {ECO:0000313|EMBL:EIL99903.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit
|
|
SCNpilot_expt_1000_bf_scaffold_2994_6
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria
|
Not on your lists |
6184..6549
|
cupin n=1 Tax=Rudaea cellulosilytica RepID=UPI000368AB24
cupin domain protein
Cupin domain protein {ECO:0000313|EMBL:ACO34181.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
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SCNpilot_expt_1000_bf_scaffold_2994_7
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6581..7960
|
branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Dyella ginsengisoli RepID=UPI0003487C31
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:AHX15895.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component
|
|
SCNpilot_expt_1000_bf_scaffold_2994_8
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8069..8392)
|
Membrane protein {ECO:0000313|EMBL:GAN45702.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2994_9
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8395..8727)
|
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=381754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa (strain PA7).;"
Tryptophan--tRNA ligase n=1 Tax=Pseudomonas aeruginosa (strain PA7) RepID=A6VBB2_PSEA7
|
|
SCNpilot_expt_1000_bf_scaffold_2994_10
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9927..10991)
|
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase HemE (Fragment) n=2 Tax=mine drainage metagenome RepID=T0Y7E4_9ZZZZ
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2994_11
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10984..11241)
|
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000347CF8B
Uncharacterized protein {ECO:0000313|EMBL:KJV30898.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2994_12
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11292..12380)
|
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=mine drainage metagenome RepID=T1CFX7_9ZZZZ
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_2994_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12377..12928)
|
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ54_9GAMM
|
|
SCNpilot_expt_1000_bf_scaffold_2994_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13094..14014)
|
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42)
Branched-chain amino acid aminotransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVC5_9GAMM
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:EIL91166.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
|
|
SCNpilot_expt_1000_bf_scaffold_2994_15
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14190..15218)
|
Tyrosine recombinase XerD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSK4_9GAMM
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
tyrosine recombinase XerD
|
|
SCNpilot_expt_1000_bf_scaffold_2994_16
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15366..16217)
|
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VK99_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGM55549.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2994_17
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16487..16813)
|
hypothetical protein n=1 Tax=Pseudomonas caeni RepID=UPI0003B72439
hypothetical protein
Tax=BJP_08E140C01_Xanthomonadales_64_42
|
|
SCNpilot_expt_1000_bf_scaffold_2994_18
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16813..17844)
|
Uncharacterized protein n=1 Tax=Pseudomonas sp. VLB120 RepID=U5VB92_9PSED
Aminopeptidase {ECO:0000313|EMBL:KGI76911.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2994_19
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17934..18530
|
Glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRP2_9GAMM
Glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase {ECO:0000313|EMBL:EIL89883.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
|
|
SCNpilot_expt_1000_bf_scaffold_2994_20
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18527..19402
|
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Anthranilate phosphoribosyltransferase n=1 Tax=mine drainage metagenome RepID=T1C0Q8_9ZZZZ
anthranilate phosphoribosyltransferase
|
|
SCNpilot_expt_1000_bf_scaffold_2994_21
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19557..20360
|
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Indole-3-glycerol-phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48]
Indole-3-glycerol phosphate synthase id=2940994 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
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|
SCNpilot_expt_1000_bf_scaffold_2994_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20363..21034
|
Phosphoserine phosphatase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIK0_9GAMM
Phosphoserine phosphatase {ECO:0000313|EMBL:EIL87041.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_2994_23
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21063..21824)
|
DNA-binding transcriptional dual regulator Crp n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1V1_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:GAN45411.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
cAMP-binding protein
|
|
SCNpilot_expt_1000_bf_scaffold_2994_24
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21965..22750
|
S-adenosylmethionine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00465, ECO:0000256|SAAS:SAAS00039304}; Short=AdoMetDC {ECO:0000256|HAMAP-Rule:MF_00465};; Short=SAMDC {ECO:0000256|HAMAP-Rule:MF_00465};; EC=4.1.1.50 {ECO:0000256|HAMAP-Rule:MF_00465, ECO:0000256|SAAS:SAAS00093036};; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
S-adenosylmethionine decarboxylase proenzyme (EC:4.1.1.50)
S-adenosylmethionine decarboxylase n=1 Tax=Dyella japonica RepID=UPI0002EC4267
|
|
SCNpilot_expt_1000_bf_scaffold_2994_25
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23064..23714)
|
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658, ECO:0000256|SAAS:SAAS00010155}; EC=1.14.13.- {ECO:0000256|HAMAP-Rule:MF_01658, ECO:0000256|SAAS:SAAS00231964};; 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; 5-demethoxyubiquinone hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Dyella japonica RepID=UPI0002E129F9
ubiquinone biosynthesis protein COQ7
|
|
SCNpilot_expt_1000_bf_scaffold_2994_26
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23997..24425
|
50S ribosomal protein L13 n=1 Tax=Dyella ginsengisoli RepID=UPI000345D4CC
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
|
|
SCNpilot_expt_1000_bf_scaffold_2994_27 |
Not on your lists |
24428..24823
|
Ribosomal protein S9 n=2 Tax=mine drainage metagenome RepID=T1AT70_9ZZZZ
Ribosomal protein S9 {ECO:0000313|EMBL:EQD59733.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ribosomal protein S9
|
|
SCNpilot_expt_1000_bf_scaffold_2994_28
unknown
|
Not on your lists |
25268..25702
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_2994_29
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25759..26403)
|
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase A n=1 Tax=Rhodanobacter denitrificans RepID=M4NK33_9GAMM
|
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SCNpilot_expt_1000_bf_scaffold_2994_30
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26424..26873)
|
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003728DBD
EVE domain-containing protein {ECO:0000313|EMBL:KGQ20118.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
|