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SCNpilot_expt_1000_bf_scaffold_8473

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8473_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..437)
DNA (435bp) protein (145aa)
Transmembrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWW9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89574.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_8473_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(434..1051)
DNA (618bp) protein (206aa)
Electron transport protein SCO1/SenC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA4_9GAMM
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:EIL97445.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems
SCNpilot_expt_1000_bf_scaffold_8473_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1023..2522)
DNA (1500bp) protein (500aa)
Cytochrome c oxidase subunit I n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA3_9GAMM
Cytochrome c oxidase subunit I {ECO:0000313|EMBL:EIL97444.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
heme/copper-type cytochrome/quinol oxidase, subunit 1
SCNpilot_expt_1000_bf_scaffold_8473_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2525..2827)
DNA (303bp) protein (101aa)
Cytochrome c oxidase subunit II n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDA2_9GAMM
Cytochrome c oxidase subunit II {ECO:0000313|EMBL:EIL97443.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
heme/copper-type cytochrome/quinol oxidase, subunit 2
SCNpilot_expt_1000_bf_scaffold_8473_5
unknown

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comp(2824..3042)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8473_6
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3248..4069)
DNA (822bp) protein (274aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
tryptophan synthase, alpha chain (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Rhodanobacter denitrificans RepID=M4NLA4_9GAMM
SCNpilot_expt_1000_bf_scaffold_8473_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4206..5417)
DNA (1212bp) protein (404aa)
tryptophan synthase, beta chain (EC:4.2.1.20)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Tryptophan synthase beta chain n=2 Tax=Rhodanobacter denitrificans RepID=M4NCT4_9GAMM
SCNpilot_expt_1000_bf_scaffold_8473_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5528..6418
DNA (891bp) protein (297aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4WVF3_9GAMM rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EIM03445.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
trpI; trpBA operon transcriptional regulator, LysR family; TrpI rbh
SCNpilot_expt_1000_bf_scaffold_8473_9
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6478..7188
DNA (711bp) protein (237aa)
D-2-hydroxyglutarate dehydrogenase {ECO:0000313|EMBL:CDM25708.1}; EC=1.1.99.2 {ECO:0000313|EMBL:CDM25708.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Oxidoreductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUR3_9GAMM
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_8473_10
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7149..7862
DNA (714bp) protein (238aa)
D-2-hydroxyglutarate dehydrogenase {ECO:0000313|EMBL:CDM25708.1}; EC=1.1.99.2 {ECO:0000313|EMBL:CDM25708.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Oxidoreductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUR3_9GAMM
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_8473_11
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7870..8958
DNA (1089bp) protein (363aa)
metallophosphoesterase n=1 Tax=Pseudomonas fragi RepID=UPI0002883E52 rbh
Putative membrane-attached phosphoesterase {ECO:0000313|EMBL:CDM25227.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
metallophosphoesterase; K07098 rbh
Displaying 11 items

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