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SCNpilot_expt_1000_bf_scaffold_1250

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1250_1
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(216..977)
DNA (762bp) protein (254aa)
metal-dependent hydrolase n=1 Tax=Dyella ginsengisoli RepID=UPI000345AB11
Metal-dependent hydrolase {ECO:0000313|EMBL:GAN45092.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
putative metal-dependent hydrolase
SCNpilot_expt_1000_bf_scaffold_1250_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(974..1900)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000364BDBF
Recombination-associated protein RdgC {ECO:0000256|HAMAP-Rule:MF_00194, ECO:0000256|SAAS:SAAS00073315}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
DNA recombination-dependent growth factor C
SCNpilot_expt_1000_bf_scaffold_1250_3
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1960..2829)
DNA (870bp) protein (290aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Dyella ginsengisoli RepID=UPI00037A9704
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000313|EMBL:GAN45861.1}; Flags: Fragment;; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
putative ATPase of the PP-loop superfamily implicated in cell cycle control; K14058 tRNA 2-thiocytidine biosynthesis protein TtcA
SCNpilot_expt_1000_bf_scaffold_1250_4
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2876..3085
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000374460A
Uncharacterized protein {ECO:0000313|EMBL:GAN45862.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
uncharacterized conserved small protein containing a coiled-coil domain
SCNpilot_expt_1000_bf_scaffold_1250_5
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3230..3817
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000347CF60
acetyltransferase, ribosomal protein N-acetylase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1250_6

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comp(3828..5048)
DNA (1221bp) protein (407aa)
Indole oxygenase n=1 Tax=uncultured bacterium JEC54 RepID=Q2VMZ8_9BACT rbh
Indole oxygenase {ECO:0000313|EMBL:AAY54299.1}; TaxID=329531 species="Bacteria; environmental samples.;" source="uncultured bacterium JEC54.;"
oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_1250_7
Pseudomonas sp. 10-1B, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5048..5581)
DNA (534bp) protein (178aa)
Flavin reductase domain-containing FMN-binding protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HLH8_PSEUO
Flavin oxidoreductase {ECO:0000313|EMBL:KIY42647.1}; TaxID=1546029 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 10-1B.;"
flavin reductase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1250_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(5634..6302)
DNA (669bp) protein (223aa)
putative carboxylesterase (EC:3.1.1.1); K06999 phospholipase/carboxylesterase
Putative Carboxylesterase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P960_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
SCNpilot_expt_1000_bf_scaffold_1250_9
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6299..8122)
DNA (1824bp) protein (608aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI000299EB4C
Uncharacterized protein {ECO:0000313|EMBL:AIB15197.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
putative hydrolase of the alpha/beta superfamily
SCNpilot_expt_1000_bf_scaffold_1250_10
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(8119..10584)
DNA (2466bp) protein (822aa)
manB; beta-mannosidase (EC:3.2.1.25); K01192 beta-mannosidase [EC:3.2.1.25]
Glycoside hydrolase family 2 sugar binding n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U593_9CHLR rbh
Glycoside hydrolase family 2 sugar binding {ECO:0000313|EMBL:EFH81673.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
SCNpilot_expt_1000_bf_scaffold_1250_11
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10581..10832)
DNA (252bp) protein (84aa)
Acyl carrier protein n=6 Tax=Rhodococcus RepID=T1VSG2_RHOER
Acyl carrier protein {ECO:0000313|EMBL:KGM41680.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
acyl carrier protein
SCNpilot_expt_1000_bf_scaffold_1250_12
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10948..11904)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029A9A6D
Uncharacterized protein {ECO:0000313|EMBL:KGM42445.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1250_13
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11912..12826)
DNA (915bp) protein (305aa)
Seryl-tRNA synthetase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P763_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:KGM41678.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
seryl-tRNA synthetase
SCNpilot_expt_1000_bf_scaffold_1250_14
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12831..14018)
DNA (1188bp) protein (396aa)
acyl-CoA dehydrogenase domain-containing protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
Acyl-CoA dehydrogenase domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZU64_RHILW
Uncharacterized protein {ECO:0000313|EMBL:KGM41679.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
SCNpilot_expt_1000_bf_scaffold_1250_15

Not on your lists

comp(14042..14860)
DNA (819bp) protein (273aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PW33_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKM63908.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
methyltransferase type 11
SCNpilot_expt_1000_bf_scaffold_1250_16
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15114..16394
DNA (1281bp) protein (427aa)
hypothetical protein n=1 Tax=Longispora albida RepID=UPI0003718FDE
Uncharacterized protein {ECO:0000313|EMBL:KGM52710.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1250_17
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16498..17652)
DNA (1155bp) protein (385aa)
thiamine pyrophosphate protein central region; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Thiamine pyrophosphate protein central region n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MIM3_RHOM4
Tax=BJP_08E140C01_Xanthomonadales_64_42
Displaying 17 items

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