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SCNpilot_expt_1000_bf_scaffold_1497

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1497_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..562)
DNA (561bp) protein (187aa)
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
DNA gyrase subunit A n=1 Tax=Rhodanobacter denitrificans RepID=M4ND63_9GAMM
SCNpilot_expt_1000_bf_scaffold_1497_2
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(696..1142)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003659425
Uncharacterized protein {ECO:0000313|EMBL:KGI78174.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
GtrA family protein
SCNpilot_expt_1000_bf_scaffold_1497_3
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1143..2381)
DNA (1239bp) protein (413aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
methylthioribose-1-phosphate isomerase (EC:5.3.1.23)
methylthioribose-1-phosphate isomerase n=1 Tax=Dyella ginsengisoli RepID=UPI0003479D93
SCNpilot_expt_1000_bf_scaffold_1497_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2958..3185
DNA (228bp) protein (76aa)
WD40 domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 PF2_9GAMM">RepID=I4WPF2_9GAMM
Xaa-Pro aminopeptidase-like protein {ECO:0000313|EMBL:AHX14125.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
WD40 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1497_5
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3207..3404)
DNA (198bp) protein (66aa)
Phage shock protein C, PspC n=3 Tax=Stenotrophomonas RepID=B4SMQ4_STRM5
phage shock protein C, PspC
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_expt_1000_bf_scaffold_1497_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3511..4578)
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003762EDF
poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit {ECO:0000313|EMBL:AGG88627.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1497_7
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4578..5630)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000373FBDE
PHA synthase subunit {ECO:0000313|EMBL:EYR69599.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
PHA synthase subunit
SCNpilot_expt_1000_bf_scaffold_1497_8

Not on your lists

comp(6070..7125)
DNA (1056bp) protein (352aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta n=1 Tax=mine drainage metagenome RepID=T0YFS0_9ZZZZ
2-oxoglutarate ferredoxin oxidoreductase subunit beta {ECO:0000313|EMBL:EQD34256.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative 2-oxoacid:acceptor oxidoreductase, beta subunit
SCNpilot_expt_1000_bf_scaffold_1497_9
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7304..9142)
DNA (1839bp) protein (613aa)
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3]
ferredoxin oxidoreductase n=1 Tax=Rudaea cellulosilytica RepID=UPI00036C88DB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_expt_1000_bf_scaffold_1497_10
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9306..11156)
DNA (1851bp) protein (617aa)
glutamate synthase (nadph) (EC:1.4.1.13)
glutamate synthase n=1 Tax=Rudaea cellulosilytica RepID=UPI00037D3496
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_expt_1000_bf_scaffold_1497_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11479..13584)
DNA (2106bp) protein (702aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLT6_9GAMM
polyribonucleotide nucleotidyltransferase
SCNpilot_expt_1000_bf_scaffold_1497_12

Not on your lists


comp(13689..13958)
DNA (270bp) protein (90aa)
Ribosomal protein S15, bacterial-type n=1 Tax=mine drainage metagenome RepID=T1BYC4_9ZZZZ
Ribosomal protein S15, bacterial-type {ECO:0000313|EMBL:EQD58840.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
SCNpilot_expt_1000_bf_scaffold_1497_13
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14245..14493)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JLH2_BURP8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACC72605.1}; Flags: Precursor;; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phymatum (strain DSM 17167 / STM815).;"
SCNpilot_expt_1000_bf_scaffold_1497_14
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14526..16589
DNA (2064bp) protein (688aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
DNA topoisomerase IV subunit B; K02622 topoisomerase IV subunit B [EC:5.99.1.-]
DNA topoisomerase 4 subunit B n=1 Tax=Rhodanobacter sp. 115 RepID=I4WQK7_9GAMM
SCNpilot_expt_1000_bf_scaffold_1497_15
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16660..17187
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Spirochaeta sp. L21-RPul-D2 RepID=V5WNS4_9SPIO
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_expt_1000_bf_scaffold_1497_16
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17198..17860)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Longispora albida RepID=UPI00037796E9
Poly-gamma-glutamate biosynthesis protein {ECO:0000313|EMBL:KDN24107.1}; TaxID=287986 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
poly-gamma-glutamate synthesis protein; K07282 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein)
Displaying 16 items

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