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SCNpilot_expt_1000_bf_scaffold_1551

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1551_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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96..1937
DNA (1842bp) protein (614aa)
DNA mismatch repair protein MutL n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB11_9GAMM
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA mismatch repair protein MutL
SCNpilot_expt_1000_bf_scaffold_1551_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1939..2772
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WPR4_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89669.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1551_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2910..3626
DNA (717bp) protein (239aa)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WPR2_9GAMM
FKBP-type peptidyl-prolyl cis-trans isomerase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1551_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4011..4616
DNA (606bp) protein (202aa)
NTP pyrophosphohydrolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WPR0_9GAMM
MutT-nudix family protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1551_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4613..5467
DNA (855bp) protein (285aa)
Rhodanese-related sulfurtransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPE4_9GAMM
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:EIL89085.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
rhodanese-related sulfurtransferase
SCNpilot_expt_1000_bf_scaffold_1551_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5602..6087)
DNA (486bp) protein (162aa)
Lipid A 3-O-deacylase (PagL) n=1 Tax=Rhodanobacter denitrificans RepID=I4WN04_9GAMM
Lipid A 3-O-deacylase (PagL)
Lipid A 3-O-deacylase (PagL) {ECO:0000313|EMBL:AGG87328.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1551_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6817..8313
DNA (1497bp) protein (499aa)
NodT family efflux transporter outer membrane lipoprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VUU8_9GAMM
NodT family efflux transporter outer membrane lipoprotein {ECO:0000313|EMBL:EIL90989.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
efflux transporter, outer membrane factor lipoprotein, NodT family
SCNpilot_expt_1000_bf_scaffold_1551_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8310..9536
DNA (1227bp) protein (409aa)
Multidrug resistance efflux pump n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEV0_9GAMM rbh
Multidrug resistance efflux pump {ECO:0000313|EMBL:EIL97991.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
multidrug resistance efflux pump rbh
SCNpilot_expt_1000_bf_scaffold_1551_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9697..11256
DNA (1560bp) protein (520aa)
EmrB/QacA subfamily drug resistance transporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VY43_9GAMM
EmrB/QacA subfamily drug resistance transporter {ECO:0000313|EMBL:EIL92134.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
drug resistance transporter, EmrB/QacA subfamily
SCNpilot_expt_1000_bf_scaffold_1551_10
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11409..12929
DNA (1521bp) protein (507aa)
multidrug resistance protein B n=1 Tax=Dyella ginsengisoli RepID=UPI00034C905B
Multidrug resistance protein B {ECO:0000313|EMBL:KGI76725.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
EmrB/QacA subfamily drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
SCNpilot_expt_1000_bf_scaffold_1551_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13050..13463)
DNA (414bp) protein (138aa)
UPI0003D04A10 related cluster n=1 Tax=unknown RepID=UPI0003D04A10
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1551_12
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13564..14241)
DNA (678bp) protein (226aa)
Putative transmembrane protein n=1 Tax=Ralstonia solanacearum (strain GMI1000) RepID=Q8XQV1_RALSO rbh
RSp1117; transmembrane protein rbh
Putative transmembrane protein {ECO:0000313|EMBL:CAD18268.1}; TaxID=267608 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain GMI1000) (Pseudomonas solanacearum).;"
SCNpilot_expt_1000_bf_scaffold_1551_13
unknown

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14452..14604
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1551_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14601..15365)
DNA (765bp) protein (255aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB05_9GAMM
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:EIL96646.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
enoyl-CoA hydratase/carnithine racemase
SCNpilot_expt_1000_bf_scaffold_1551_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15518..16474)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W4K0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94391.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1551_16
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17046..18782)
DNA (1737bp) protein (579aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Dyella ginsengisoli RepID=UPI00034D6C41
SCNpilot_expt_1000_bf_scaffold_1551_17
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18779..19048)
DNA (270bp) protein (90aa)
phosphocarrier protein HPr n=1 Tax=Dyella japonica RepID=UPI0002D524AE
Phosphocarrier protein HPr {ECO:0000313|EMBL:AIF47139.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
phosphotransferase system HPr (HPr) family protein
SCNpilot_expt_1000_bf_scaffold_1551_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19243..19659)
DNA (417bp) protein (139aa)
PTS fructose transporter subunit IIA n=1 Tax=Dyella ginsengisoli RepID=UPI000345CA88
phosphotransferase system, mannose/fructose-specific component IIA
Phosphotransferase system, mannose/fructose-specific component IIA {ECO:0000313|EMBL:AGG90213.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1551_19
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19729..20574)
DNA (846bp) protein (282aa)
UPF0042 nucleotide-binding protein UUC_10667 n=1 Tax=Rhodanobacter denitrificans RepID=I4WR06_9GAMM
Nucleotide-binding protein VI08_13110 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
putative P-loop-containing kinase
SCNpilot_expt_1000_bf_scaffold_1551_20
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20621..21565)
DNA (945bp) protein (315aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;
serine kinase of the HPr protein, regulates carbohydrate metabolism (EC:2.7.1.-)
HPr kinase/phosphorylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR05_9GAMM
SCNpilot_expt_1000_bf_scaffold_1551_21
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21614..21934)
DNA (321bp) protein (107aa)
Ribosomal subunit interface protein (Fragment) n=3 Tax=mine drainage metagenome RepID=T0YGB3_9ZZZZ
Ribosome hibernation promoting factor HPF {ECO:0000313|EMBL:GAN45858.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
ribosomal subunit interface protein; K05808 putative sigma-54 modulation protein
SCNpilot_expt_1000_bf_scaffold_1551_22
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22141..23574)
DNA (1434bp) protein (478aa)
RNA polymerase subunit sigma-54 n=1 Tax=Dyella japonica RepID=UPI00031BB5E1
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
RNA polymerase, sigma 54 subunit, RpoN/SigL
SCNpilot_expt_1000_bf_scaffold_1551_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23865..24584)
DNA (720bp) protein (240aa)
ABC transporter ATPase n=1 Tax=Rhodanobacter denitrificans RepID=I4WR02_9GAMM
ABC-type (unclassified) transport system, ATPase component
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_1551_24
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24593..25252)
DNA (660bp) protein (220aa)
Lipopolysaccharide transport periplasmic protein LptA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VKN5_9GAMM
Lipopolysaccharide export system protein LptA {ECO:0000256|HAMAP-Rule:MF_01914}; Flags: Precursor;; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
lipopolysaccharide transport periplasmic protein LptA
SCNpilot_expt_1000_bf_scaffold_1551_25
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25212..25601)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WSR4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02506.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein; K11719 lipopolysaccharide export system protein LptC
SCNpilot_expt_1000_bf_scaffold_1551_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25765..26280)
DNA (516bp) protein (172aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSE3_9GAMM
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase {ECO:0000313|EMBL:EIM02385.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
SCNpilot_expt_1000_bf_scaffold_1551_27
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26499..27515)
DNA (1017bp) protein (339aa)
Arabinose 5-phosphate isomerase {ECO:0000256|PIRNR:PIRNR004692}; Short=API {ECO:0000256|PIRNR:PIRNR004692};; EC=5.3.1.13 {ECO:0000256|PIRNR:PIRNR004692};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
KpsF/GutQ family protein; K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13]
D-arabinose 5-phosphate isomerase n=1 Tax=Dyella ginsengisoli RepID=UPI0003477C00
SCNpilot_expt_1000_bf_scaffold_1551_28
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27662..27898
DNA (237bp) protein (79aa)
BolA-like protein n=1 Tax=mine drainage metagenome RepID=T1ADJ8_9ZZZZ
BolA family transcriptional regulator {ECO:0000313|EMBL:KGO98800.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
putative transcriptional regulator, BolA superfamily
SCNpilot_expt_1000_bf_scaffold_1551_29
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27898..29157
DNA (1260bp) protein (420aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI000347269E
SCNpilot_expt_1000_bf_scaffold_1551_30
Alcanivorax pacificus, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29225..30838
DNA (1614bp) protein (538aa)
alcohol/choline dehydrogenase (EC:1.1.99.-); K00119 [EC:1.1.99.-] rbh
Alcohol/choline dehydrogenase n=1 Tax=Alcanivorax pacificus W11-5 RepID=K2GUK3_9GAMM rbh
Alcohol/choline dehydrogenase {ECO:0000313|EMBL:AJD47286.1}; TaxID=391936 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax pacificus W11-5.;"
Displaying items 1-30 of 50 in total

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