ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1569

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1569_1
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

357..770
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00036B289A
Uncharacterized protein {ECO:0000313|EMBL:GAN45342.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_expt_1000_bf_scaffold_1569_2
Synechococcus sp. PCC 7002, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(839..1252)
DNA (414bp) protein (138aa)
LCCL domain protein n=1 Tax=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) RepID=B1XJV7_SYNP2
LCCL domain-containing protein
LCCL domain protein {ECO:0000313|EMBL:ACA99085.1}; TaxID=32049 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum; quadruplicatum).;"
SCNpilot_expt_1000_bf_scaffold_1569_3
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1333..1881)
DNA (549bp) protein (183aa)
Tax=RBG_16_Deltaproteobacteria_71_12_curated
SCNpilot_expt_1000_bf_scaffold_1569_4
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

2097..4811
DNA (2715bp) protein (905aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000376EFAE rbh
DNA-binding protein
DNA-binding protein with winged-HTH domain {ECO:0000313|EMBL:AFL90473.1}; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
SCNpilot_expt_1000_bf_scaffold_1569_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4874..7996)
DNA (3123bp) protein (1041aa)
Heavy metal efflux pump CzcA n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUI8_9GAMM rbh
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:EIL90879.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
heavy metal efflux pump, cobalt-zinc-cadmium
SCNpilot_expt_1000_bf_scaffold_1569_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7993..9318)
DNA (1326bp) protein (442aa)
Secretion protein HlyD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN92_9GAMM
Secretion protein HlyD {ECO:0000313|EMBL:EIM00934.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
RND family efflux transporter, MFP subunit
SCNpilot_expt_1000_bf_scaffold_1569_7
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9315..10823)
DNA (1509bp) protein (503aa)
Heavy metal cation tricomponent efflux outer membrane porin ZneC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WN93_9GAMM
Histidine kinase {ECO:0000313|EMBL:AHX15229.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
efflux transporter, outer membrane factor lipoprotein, NodT family
SCNpilot_expt_1000_bf_scaffold_1569_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11297..13630)
DNA (2334bp) protein (778aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NI99_9GAMM
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:AGG90675.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
dipeptidyl aminopeptidase/acylaminoacyl peptidase
SCNpilot_expt_1000_bf_scaffold_1569_9
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13704..13976)
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Lewinella persica RepID=UPI0003662952
Uncharacterized protein {ECO:0000313|EMBL:KFA93200.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
SCNpilot_expt_1000_bf_scaffold_1569_10
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13986..14441)
DNA (456bp) protein (152aa)
lactoylglutathione lyase n=1 Tax=Dyella ginsengisoli RepID=UPI0003482C25
Lactoylglutathione lyase {ECO:0000313|EMBL:EYR67554.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
lactoylglutathione lyase-like lyase
SCNpilot_expt_1000_bf_scaffold_1569_11
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14842..17727
DNA (2886bp) protein (962aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
glycine dehydrogenase, decarboxylating (EC:1.4.4.2)
Glycine dehydrogenase (decarboxylating) n=1 Tax=Rhodanobacter denitrificans RepID=I4WY26_9GAMM
SCNpilot_expt_1000_bf_scaffold_1569_12
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17818..18660)
DNA (843bp) protein (281aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01967}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01967};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01967}; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
NAD-dependent protein deacetylase n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8ZJ87_XANCT
NAD-dependent deacetylase
SCNpilot_expt_1000_bf_scaffold_1569_13
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18789..18995
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4M9_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:KGM57038.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1569_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18999..19439
DNA (441bp) protein (147aa)
Death-on-curing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WS97_9GAMM
Death-on-curing protein {ECO:0000313|EMBL:EIM02339.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
prophage maintenance system killer protein; K07341 death on curing protein
SCNpilot_expt_1000_bf_scaffold_1569_15

Not on your lists

comp(19424..19816)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1BVP2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD57985.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1569_16
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20021..20719)
DNA (699bp) protein (233aa)
glutathione-disulfide reductase; K00383 glutathione reductase (NADPH) [EC:1.8.1.7]
Glutathione-disulfide reductase n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RSV1_ALLVD
Glutathione-disulfide reductase {ECO:0000313|EMBL:ADC62260.1}; TaxID=572477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
Displaying 16 items

View Taxonomy