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SCNpilot_expt_1000_bf_scaffold_1809

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1809_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..885)
DNA (885bp) protein (295aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00180}; Short=DHBP synthase {ECO:0000256|HAMAP-Rule:MF_00180};; EC=4.1.99.12 {ECO:0000256|HAMAP-Rule:MF_00180};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:4.1.2.- 3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJ98_9GAMM
SCNpilot_expt_1000_bf_scaffold_1809_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(882..1547)
DNA (666bp) protein (222aa)
riboflavin synthase subunit alpha; K00793 riboflavin synthase [EC:2.5.1.9]
Riboflavin synthase, alpha subunit n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L4A5_FRAAD
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:GAN45801.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_expt_1000_bf_scaffold_1809_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1903..2814)
DNA (912bp) protein (304aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WZB3_9GAMM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGG87940.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1809_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2904..3914
DNA (1011bp) protein (337aa)
Alcohol dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZB4_9GAMM rbh
Zn-dependent oxidoreductase, NADPH:quinone reductase rbh
Zn-dependent oxidoreductase, NADPH:quinone reductase {ECO:0000313|EMBL:AGG87939.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1809_5
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3926..4789
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003780782
Uncharacterized protein {ECO:0000313|EMBL:AKF86160.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
beta-lactamase
SCNpilot_expt_1000_bf_scaffold_1809_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4808..5611)
DNA (804bp) protein (268aa)
Oxidoreductase, gfo/idh/moca family protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ99_9GAMM rbh
Oxidoreductase, gfo/idh/moca family protein {ECO:0000313|EMBL:EIL87290.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
oxidoreductase, gfo/idh/moca family
SCNpilot_expt_1000_bf_scaffold_1809_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5813..7048)
DNA (1236bp) protein (412aa)
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:3.5.4.26 1.1.1.193)
Riboflavin biosynthesis protein RibD n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ98_9GAMM
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_1000_bf_scaffold_1809_8
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7247..7771)
DNA (525bp) protein (175aa)
Transcriptional repressor NrdR n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UW95_PSEUP
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR
SCNpilot_expt_1000_bf_scaffold_1809_9
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7775..9043)
DNA (1269bp) protein (423aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
glycine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1]
serine hydroxymethyltransferase n=1 Tax=Dyella ginsengisoli RepID=UPI00034898BC
SCNpilot_expt_1000_bf_scaffold_1809_10
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9155..9895
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037FF7F0
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_expt_1000_bf_scaffold_1809_11
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9895..10224
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037FF7F0
dienelactone hydrolase
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_expt_1000_bf_scaffold_1809_12
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10250..12115)
DNA (1866bp) protein (622aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003713739 rbh
Membrane protein {ECO:0000313|EMBL:KGY24498.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1809_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12646..14307
DNA (1662bp) protein (554aa)
ABC transporter ATP-binding protein n=1 Tax=Dyella japonica RepID=UPI0002E45678
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIF49286.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ATP-binding cassette protein, ChvD family
SCNpilot_expt_1000_bf_scaffold_1809_14
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14515..15507
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D4D556 rbh
Beta-lactamase {ECO:0000313|EMBL:AIF49288.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
elaC; arylsulfatase precursor (aryl-sulfate sulfohydrolase) protein rbh
SCNpilot_expt_1000_bf_scaffold_1809_15
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15518..16771)
DNA (1254bp) protein (418aa)
Major facilitator superfamily MFS_1 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02B92_SOLUE rbh
major facilitator transporter rbh
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_expt_1000_bf_scaffold_1809_16

Not on your lists

comp(16876..17355)
DNA (480bp) protein (160aa)
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:EQD63928.1}; EC=2.3.1.- {ECO:0000313|EMBL:EQD63928.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Ribosomal-protein-alanine acetyltransferase n=2 Tax=mine drainage metagenome RepID=T1B651_9ZZZZ
ribosomal-protein-alanine acetyltransferase
SCNpilot_expt_1000_bf_scaffold_1809_17
unknown

Not on your lists

comp(17357..17827)
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1809_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17824..18642)
DNA (819bp) protein (273aa)
phosphatidylserine synthase (EC:2.7.8.8)
Phosphatidylserine synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJK6_9GAMM
Phosphatidylserine synthase {ECO:0000313|EMBL:EIL99647.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_1000_bf_scaffold_1809_19
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18783..19256
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000313304A
Uncharacterized protein {ECO:0000313|EMBL:AIF49240.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_expt_1000_bf_scaffold_1809_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


20065..21771
DNA (1707bp) protein (569aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Proline--tRNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSD8_9GAMM
prolyl-tRNA synthetase, family II
SCNpilot_expt_1000_bf_scaffold_1809_21
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21894..22205
DNA (312bp) protein (104aa)
histidine biosynthesis protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003449E01
Histidine biosynthesis protein {ECO:0000313|EMBL:AHX14493.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
DNA-binding protein H-NS
SCNpilot_expt_1000_bf_scaffold_1809_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22379..23647)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003462CBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87989.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1809_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23670..23840)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJL1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99652.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
membrane protein implicated in regulation of membrane protease activity
SCNpilot_expt_1000_bf_scaffold_1809_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23881..24093)
DNA (213bp) protein (71aa)
Membrane protein implicated in regulation of membrane protease activity n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ68_9GAMM
membrane protein implicated in regulation of membrane protease activity
Membrane protein implicated in regulation of membrane protease activity {ECO:0000313|EMBL:AGG87988.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_1809_25
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24301..25236)
DNA (936bp) protein (312aa)
membrane protein n=1 Tax=Dyella ginsengisoli RepID=UPI000349DB9F
Membrane protein {ECO:0000313|EMBL:AHX12156.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
membrane protease subunit, stomatin/prohibitin
SCNpilot_expt_1000_bf_scaffold_1809_26
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25309..26622)
DNA (1314bp) protein (438aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
histidine kinase n=1 Tax=Dyella japonica RepID=UPI00030B0AE6
HAMP domain-containing protein,histidine kinase
SCNpilot_expt_1000_bf_scaffold_1809_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26840..27394)
DNA (555bp) protein (185aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VSE9_9GAMM
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:EIL90140.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
SCNpilot_expt_1000_bf_scaffold_1809_28
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28305..29039)
DNA (735bp) protein (245aa)
GDSL family lipase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB16A
Lipolytic enzyme, G-D-S-L {ECO:0000313|EMBL:KGB53087.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
lipase/acylhydrolase, GDSL family
SCNpilot_expt_1000_bf_scaffold_1809_29
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29394..30206)
DNA (813bp) protein (271aa)
ABC transporter permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4VKT1_9GAMM
ABC transporter permease {ECO:0000313|EMBL:EIL87822.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein; K02004 putative ABC transport system permease protein
Displaying 29 items

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