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SCNpilot_expt_1000_bf_scaffold_11146

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11146_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(104..562)
DNA (459bp) protein (153aa)
Small protein A (TmRNA-binding) n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNN8_9GAMM
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
small protein A (tmRNA-binding)
SCNpilot_expt_1000_bf_scaffold_11146_2
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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642..1046
DNA (405bp) protein (135aa)
Fur family transcriptional regulator n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5F294
Fur family transcriptional regulator {ECO:0000313|EMBL:KFN49985.1}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Fe2+/Zn2+ uptake regulation protein
SCNpilot_expt_1000_bf_scaffold_11146_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1515..2933
DNA (1419bp) protein (473aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003636E9C
Uncharacterized protein {ECO:0000313|EMBL:EIL92446.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11146_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3099..3986)
DNA (888bp) protein (296aa)
DNA repair protein RecN n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH9_9GAMM
DNA replication and repair protein RecN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_11146_5

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4075..5931
DNA (1857bp) protein (619aa)
Negative regulator of class I heat shock protein n=1 Tax=mine drainage metagenome RepID=T1C9Q1_9ZZZZ rbh
Negative regulator of class I heat shock protein {ECO:0000313|EMBL:EQD77883.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
heat-inducible transcription repressor HrcA
SCNpilot_expt_1000_bf_scaffold_11146_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6140..6685
DNA (546bp) protein (182aa)
Protein GrpE n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI84_9GAMM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
molecular chaperone GrpE (heat shock protein)
SCNpilot_expt_1000_bf_scaffold_11146_7
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6777..8729
DNA (1953bp) protein (651aa)
Chaperone protein DnaK n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIQ8_9GAMM rbh
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
chaperone protein DnaK; K04043 molecular chaperone DnaK rbh
SCNpilot_expt_1000_bf_scaffold_11146_8
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8888..9508
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035E7DEC
Uncharacterized protein {ECO:0000313|EMBL:AHX13390.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11146_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9505..9804
DNA (300bp) protein (100aa)
Chaperone protein DnaJ n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6V0_9GAMM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
chaperone protein DnaJ
Displaying 9 items

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