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SCNpilot_expt_1000_bf_scaffold_3143

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3143_1
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(565..780)
DNA (216bp) protein (72aa)
carbon storage regulator n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B39E4A
csrA; carbon storage regulator; K03563 carbon storage regulator
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_expt_1000_bf_scaffold_3143_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1067..3619)
DNA (2553bp) protein (851aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
alanyl-tRNA synthetase n=1 Tax=Dyella ginsengisoli RepID=UPI00034C783C
SCNpilot_expt_1000_bf_scaffold_3143_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3811..4299)
DNA (489bp) protein (163aa)
Regulatory protein RecX n=1 Tax=Rhodanobacter denitrificans RepID=M4NFR2_9GAMM
hypothetical protein
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_3143_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4394..5434)
DNA (1041bp) protein (347aa)
recombinase RecA n=1 Tax=Dyella ginsengisoli RepID=UPI000348FDEE
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
protein RecA
SCNpilot_expt_1000_bf_scaffold_3143_5

Not on your lists

comp(5639..6064)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003662AE4
Competence/damage-inducible protein CinA {ECO:0000313|EMBL:EQD75766.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein; K03743
SCNpilot_expt_1000_bf_scaffold_3143_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6145..6693)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037C9B0C
PAP2 superfamily protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_3143_7

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comp(6668..7813)
DNA (1146bp) protein (382aa)
Glycosyl transferase, group 1 family protein n=2 Tax=mine drainage metagenome RepID=T0YAZ0_9ZZZZ
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:EQD28967.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_3143_8
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8195..8899)
DNA (705bp) protein (235aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UPN9_PSEUP
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
putative phosphate transport system-like protein; K02039 phosphate transport system protein
SCNpilot_expt_1000_bf_scaffold_3143_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9088..9915)
DNA (828bp) protein (276aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Phosphate transporter ATP-binding protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8J2_9GAMM
phosphate ABC transporter ATP-binding protein, PhoT family
SCNpilot_expt_1000_bf_scaffold_3143_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9908..10777)
DNA (870bp) protein (290aa)
Phosphate ABC transporter permease PstA n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8J1_9GAMM
Phosphate ABC transporter permease PstA {ECO:0000313|EMBL:EIL95782.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
phosphate ABC transporter membrane protein 2, PhoT family
SCNpilot_expt_1000_bf_scaffold_3143_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10777..11748)
DNA (972bp) protein (324aa)
ABC transporter phosphate permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8J0_9GAMM rbh
ABC transporter phosphate permease {ECO:0000313|EMBL:EIL95781.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
phosphate ABC transporter inner membrane subunit PstC; K02037 phosphate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_3143_12
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11902..12930)
DNA (1029bp) protein (343aa)
phosphate-binding protein n=1 Tax=Xanthomonas sacchari RepID=UPI00026307FE
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
pstS2; phosphate ABC transporter substrate-binding protein; K02040 phosphate transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_3143_13
unknown

Not on your lists

14359..14484
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3143_14
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14644..15684)
DNA (1041bp) protein (347aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000349AECA
phosphate regulon sensor kinase PhoR
SCNpilot_expt_1000_bf_scaffold_3143_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15681..16469)
DNA (789bp) protein (263aa)
Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Rhodanobacter sp. 115 RepID=I4WES8_9GAMM
Transcriptional regulator PhoB {ECO:0000313|EMBL:AHX12599.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
phosphate regulon transcriptional regulatory protein PhoB
SCNpilot_expt_1000_bf_scaffold_3143_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16538..17842)
DNA (1305bp) protein (435aa)
TonB family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZ07_9GAMM
antirepressor regulating drug resistance protein
Antirepressor regulating drug resistance protein {ECO:0000313|EMBL:AGG88048.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_3143_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17829..18200)
DNA (372bp) protein (124aa)
CopY family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8N4_9GAMM
CopY family transcriptional regulator {ECO:0000313|EMBL:EIL95825.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3143_18
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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18338..18802
DNA (465bp) protein (155aa)
DNA mismatch repair protein MutS n=1 Tax=Rudaea cellulosilytica RepID=UPI00037D9469
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
mutS; DNA mismatch repair protein, ATPase; K03555 DNA mismatch repair protein MutS
SCNpilot_expt_1000_bf_scaffold_3143_19
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18808..20334
DNA (1527bp) protein (509aa)
DNA mismatch repair protein MutS n=1 Tax=Dyella japonica RepID=UPI0002E956B4
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
SCNpilot_expt_1000_bf_scaffold_3143_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20331..20726
DNA (396bp) protein (132aa)
DNA mismatch repair protein MutS n=1 Tax=Rhodanobacter denitrificans RepID=M4NHY6_9GAMM
DNA mismatch repair protein MutS
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 20 items

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