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SCNpilot_expt_1000_bf_scaffold_3169

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3169_1
unknown

Not on your lists

comp(2..127)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3169_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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454..708
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030BDFB9
Uncharacterized protein {ECO:0000313|EMBL:AHX14300.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3169_3
unknown

Not on your lists

1103..1492
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3169_4
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1586..2107
DNA (522bp) protein (174aa)
Molybdenum cofactor biosynthesis protein B n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVJ4_PSEUU
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
molybdenum cofactor biosynthesis protein B; K03638 molybdenum cofactor biosynthesis protein B
SCNpilot_expt_1000_bf_scaffold_3169_5
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2321..2587)
DNA (267bp) protein (89aa)
Acylphosphatase {ECO:0000256|RuleBase:RU000553, ECO:0000256|SAAS:SAAS00255930}; EC=3.6.1.7 {ECO:0000256|RuleBase:RU000553};; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7]
Acylphosphatase n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7G2D0_XANCT
SCNpilot_expt_1000_bf_scaffold_3169_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2590..3096)
DNA (507bp) protein (169aa)
Thiol-disulfide isomerase-like thioredoxin n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T4_9GAMM
Thiol-disulfide isomerase-like thioredoxin {ECO:0000313|EMBL:EIL93775.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
thiol-disulfide isomerase-like thioredoxin
SCNpilot_expt_1000_bf_scaffold_3169_7
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3093..4334)
DNA (1242bp) protein (414aa)
hypothetical protein (EC:3.1.-.-)
UPF0761 membrane protein rbn n=1 Tax=Rhodanobacter denitrificans RepID=I4WG37_9GAMM
UPF0761 membrane protein LF63_0111300 {ECO:0000256|HAMAP-Rule:MF_00672}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
SCNpilot_expt_1000_bf_scaffold_3169_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4520..5092
DNA (573bp) protein (191aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
NAD(P)H dehydrogenase (quinone) n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T6_9GAMM
NAD(P)H:quinone oxidoreductase, type IV
SCNpilot_expt_1000_bf_scaffold_3169_9
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5219..5437
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002EFE893
Membrane protein {ECO:0000313|EMBL:KGI77284.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3169_10
unknown

Not on your lists

comp(5829..6362)
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3169_11
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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6614..7087
DNA (474bp) protein (158aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MDU3_RHOM4
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ACY49087.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
SCNpilot_expt_1000_bf_scaffold_3169_12
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7191..7808)
DNA (618bp) protein (206aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
queuine tRNA-ribosyltransferase n=1 Tax=Dyella japonica RepID=UPI0002F213BB
SCNpilot_expt_1000_bf_scaffold_3169_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8343..8747)
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035C6EF8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89832.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_3169_14
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8791..9867)
DNA (1077bp) protein (359aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035EEB5E
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
SCNpilot_expt_1000_bf_scaffold_3169_15

Not on your lists

comp(10053..10655)
DNA (603bp) protein (201aa)
Two component transcriptional regulator, LuxR family n=2 Tax=mine drainage metagenome RepID=T1CQ70_9ZZZZ rbh
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EQD70644.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
SCNpilot_expt_1000_bf_scaffold_3169_16
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10652..11866)
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003798498 rbh
Histidine kinase {ECO:0000313|EMBL:AJC47607.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_3169_17
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11891..12487)
DNA (597bp) protein (199aa)
Nickel-cobalt-cadmium resistance protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CQV2_9EURY
Nickel-cobalt-cadmium resistance protein {ECO:0000313|EMBL:ELZ24787.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena limicola JCM 13563.;"
putative protein-S-isoprenylcysteine methyltransferase
SCNpilot_expt_1000_bf_scaffold_3169_18
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12706..14211
DNA (1506bp) protein (502aa)
ornithine/acetylornithine aminotransferase (EC:2.6.1.36)
Ornithine/acetylornithine aminotransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WNR7_9GAMM
Lysine 6-aminotransferase {ECO:0000313|EMBL:KJV27197.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
SCNpilot_expt_1000_bf_scaffold_3169_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14566..14904
DNA (339bp) protein (113aa)
PsiF repeat-containing protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5E2_9GAMM
PsiF repeat-containing protein {ECO:0000313|EMBL:EIL94683.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
psiF repeat protein
SCNpilot_expt_1000_bf_scaffold_3169_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15047..15724
DNA (678bp) protein (226aa)
membrane protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI0003642598 rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL86844.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3169_21
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15747..16190)
DNA (444bp) protein (148aa)
Nuclear protein SET n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VV92_9GAMM
Nuclear protein SET {ECO:0000313|EMBL:EIL91133.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SET domain-containing protein
Displaying 21 items

View Taxonomy