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SCNpilot_expt_1000_bf_scaffold_3579

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3579_1
unknown

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1..669
DNA (669bp) protein (223aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3579_2
unknown

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comp(767..1081)
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3579_3
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1243..2088
DNA (846bp) protein (282aa)
ribosomal RNA small subunit methyltransferase RsmB; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
Ribosomal RNA small subunit methyltransferase RsmB n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L3P0_FRAAD
SCNpilot_expt_1000_bf_scaffold_3579_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2235..3998
DNA (1764bp) protein (588aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WK54_9GAMM
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase {ECO:0000313|EMBL:AGG90756.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_3579_5
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3958..5010
DNA (1053bp) protein (351aa)
glycosyl transferase family 1 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4EEE5
Glycosyl transferase family 1 {ECO:0000313|EMBL:GAN45024.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_3579_6
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5007..5996
DNA (990bp) protein (330aa)
glycosyl transferase family 1 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4EEE5 rbh
Glycosyl transferase family 1 {ECO:0000313|EMBL:GAN45024.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
glycosyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_3579_7
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6191..7096)
DNA (906bp) protein (302aa)
GDP-6-deoxy-D-lyxo-4-hexulose reductase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B56DA5 rbh
3-beta hydroxysteroid dehydrogenase/isomerase family protein {ECO:0000313|EMBL:AIO33587.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
NAD-dependent epimerase/dehydratase rbh
SCNpilot_expt_1000_bf_scaffold_3579_8
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7080..8114)
DNA (1035bp) protein (345aa)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
h16_A2900; GDP-D-mannose 4,6 dehydratase (EC:4.2.1.47); K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47]
GDP-mannose 4,6-dehydratase n=1 Tax=Pseudomonas moraviensis R28 RepID=V8QZI2_9PSED rbh
SCNpilot_expt_1000_bf_scaffold_3579_9
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8191..9000)
DNA (810bp) protein (270aa)
Lipopolysaccharide core biosynthesis glycosyltransferase n=2 Tax=mine drainage metagenome RepID=T1ATK6_9ZZZZ rbh
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:GAN45021.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
lipopolysaccharide core biosynthesis glycosyl transferase
Displaying 9 items

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