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SCNpilot_expt_1000_bf_scaffold_4022

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4022_1
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..613
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E51D4D
Uncharacterized protein {ECO:0000313|EMBL:KJV36271.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
putative signal transduction protein containing EAL and modified HD-GYP domains
SCNpilot_expt_1000_bf_scaffold_4022_2
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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819..1184
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002FED5ED
Uncharacterized protein {ECO:0000313|EMBL:AIF49159.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4022_3
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1397..1660)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYS4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJV29665.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4022_4
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1657..2967)
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBK7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJV29721.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
Flagellar hook-length control protein FliK
SCNpilot_expt_1000_bf_scaffold_4022_5
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3073..4701)
DNA (1629bp) protein (543aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037444C2
PAS/PAC/Chase sensor-containing diguanylate cyclase/phosphodiesterase
Tax=GWA2_Rhodocyclales_65_20_curated
SCNpilot_expt_1000_bf_scaffold_4022_6
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4701..6368)
DNA (1668bp) protein (556aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037444C2
PAS domain S-box
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_1000_bf_scaffold_4022_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6615..6938
DNA (324bp) protein (108aa)
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) n=1 Tax=Rhodanobacter denitrificans RepID=M4NGI3_9GAMM
anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) {ECO:0000313|EMBL:AGG90045.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_4022_8
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6959..7321
DNA (363bp) protein (121aa)
Fis family transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI000348FA4A
Fis family transcriptional regulator {ECO:0000313|EMBL:AHX14342.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; K03413 two-component system, chemotaxis family, response regulator CheY
SCNpilot_expt_1000_bf_scaffold_4022_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7329..9296
DNA (1968bp) protein (656aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
CheA signal transduction histidine kinase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYS0_9GAMM
chemotaxis protein histidine kinase-like protein
SCNpilot_expt_1000_bf_scaffold_4022_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9384..9890
DNA (507bp) protein (169aa)
Chemotaxis signal transduction protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NR43_9GAMM
chemotaxis signal transduction protein
Chemotaxis signal transduction protein {ECO:0000313|EMBL:AGG90041.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_4022_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9909..11675
DNA (1767bp) protein (589aa)
Methyl-accepting chemotaxis protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYR6_9GAMM rbh
methyl-accepting chemotaxis protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_4022_12
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11679..12530
DNA (852bp) protein (284aa)
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002EBEA73
methylase of chemotaxis methyl-accepting protein
SCNpilot_expt_1000_bf_scaffold_4022_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12535..13188
DNA (654bp) protein (218aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBL5_9GAMM
chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_4022_14
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13510..14097
DNA (588bp) protein (196aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
chemotaxis protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037CA119
chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
Displaying 14 items

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