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SCNpilot_expt_1000_bf_scaffold_4339

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4339_1
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..2440)
DNA (2439bp) protein (813aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIC4_9GAMM
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KGI78301.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
SCNpilot_expt_1000_bf_scaffold_4339_2

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comp(2611..3231)
DNA (621bp) protein (207aa)
Transcriptional regulator, TetR family protein n=3 Tax=mine drainage metagenome RepID=T1CM34_9ZZZZ
Transcriptional regulator, TetR family protein {ECO:0000313|EMBL:EQD69419.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4339_3
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3452..3880
DNA (429bp) protein (143aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
ndk; nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6]
Nucleoside diphosphate kinase id=2715433 bin=GWF1_Xanthomonadales_69_6 species=Laribacter hongkongensis genus=Laribacter taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
SCNpilot_expt_1000_bf_scaffold_4339_4

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3899..5029
DNA (1131bp) protein (377aa)
2-vinyl bacteriochlorophyllide hydratase; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Ribosomal RNA large subunit methyltransferase N (Fragment) n=1 Tax=mine drainage metagenome RepID=T1BTR2_9ZZZZ rbh
Ribosomal RNA large subunit methyltransferase N {ECO:0000313|EMBL:EQD73252.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
SCNpilot_expt_1000_bf_scaffold_4339_5
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5019..5828
DNA (810bp) protein (270aa)
Pilus biogenesis/stability type IV, PilW n=2 Tax=mine drainage metagenome RepID=T1CD45_9ZZZZ
Pilus assembly protein PilW {ECO:0000313|EMBL:AHX13080.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
type IV pilus biogenesis/stability protein PilW
SCNpilot_expt_1000_bf_scaffold_4339_6
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5825..6784
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX36_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHX13081.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4339_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6976..7641
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX37_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91778.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4339_8
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7638..8138
DNA (501bp) protein (167aa)
Outer membrane protein assembly factor BamB n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L2N8_FRAAD
outer membrane assembly lipoprotein YfgL
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
Displaying 8 items

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