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SCNpilot_expt_1000_bf_scaffold_7103

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7103_1
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

2..610
DNA (609bp) protein (203aa)
Glycosyl transferase family 2 n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MF25_RHOM4
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACY47475.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
SCNpilot_expt_1000_bf_scaffold_7103_2
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(685..1761)
DNA (1077bp) protein (359aa)
Radical SAM domain protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6S9R0_9FLAO
radical SAM protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_expt_1000_bf_scaffold_7103_3
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

Not on your lists

comp(1867..3957)
DNA (2091bp) protein (697aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WSN4_9GAMM
hypothetical protein
Tax=RBG_13_Aminicenantes_62_12_curated
SCNpilot_expt_1000_bf_scaffold_7103_4
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4019..6532)
DNA (2514bp) protein (838aa)
Glycosyl transferase family 2 n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9H3G6_GLUDA rbh
family 2 glycosyl transferase rbh
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACI52729.1}; Putative glycosyl transferase {ECO:0000313|EMBL:CAP57314.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_expt_1000_bf_scaffold_7103_5
unknown

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6612..7169
DNA (558bp) protein (186aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7103_6
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7181..8599)
DNA (1419bp) protein (473aa)
ABC transporter-like protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WSP1_9GAMM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHF08077.1}; TaxID=871968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium metallireducens DSM 15288.;"
ABC transporter; K09691 lipopolysaccharide transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_7103_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8589..9335)
DNA (747bp) protein (249aa)
ABC transporter n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VX62_9GAMM rbh
hypothetical protein; K09690 lipopolysaccharide transport system permease protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_7103_8
unknown

Not on your lists

9532..9939
DNA (408bp) protein (136aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7103_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10344..11453)
DNA (1110bp) protein (370aa)
Glycosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NB50_9GAMM
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:AGG87840.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_7103_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11450..12589)
DNA (1140bp) protein (380aa)
Glycosyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WT51_9GAMM
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:AGG87839.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_7103_11
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12592..14109)
DNA (1518bp) protein (506aa)
radical SAM protein n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00035FC4F3
Radical SAM protein {ECO:0000313|EMBL:KJV36810.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
Fe-S oxidoreductase
SCNpilot_expt_1000_bf_scaffold_7103_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14106..14798)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCV7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97298.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
methylase involved in ubiquinone/menaquinone biosynthesis
SCNpilot_expt_1000_bf_scaffold_7103_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14798..16018)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCV6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97297.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cytosine deaminase-like metal-dependent hydrolase
SCNpilot_expt_1000_bf_scaffold_7103_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16015..16287)
DNA (273bp) protein (91aa)
Methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCV5_9GAMM
methylase involved in ubiquinone/menaquinone biosynthesis
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_7103_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16284..16820)
DNA (537bp) protein (179aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Rhodanobacter denitrificans RepID=M4NB46_9GAMM
methylase involved in ubiquinone/menaquinone biosynthesis
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:AGG87835.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_7103_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17197..18015
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDJ0_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_7103_17
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18074..18658
DNA (585bp) protein (195aa)
RNA polymerase sigma70 n=1 Tax=Dyella japonica RepID=UPI00031DD4C8
RNA polymerase sigma70 {ECO:0000313|EMBL:AIF46950.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
RNA polymerase sigma factor, sigma-70 family
SCNpilot_expt_1000_bf_scaffold_7103_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18655..19287
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WT68_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87822.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_7103_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19284..20579
DNA (1296bp) protein (432aa)
Subtilase family serine protease n=1 Tax=Rhodanobacter denitrificans RepID=I4WT69_9GAMM
subtilisin-like serine protease
Subtilisin-like serine protease {ECO:0000313|EMBL:AGG87821.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_7103_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20572..22674
DNA (2103bp) protein (701aa)
GTP cyclohydrolase FolE2 {ECO:0000256|HAMAP-Rule:MF_01527}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_01527};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase FolE2 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQD1_9GAMM
SCNpilot_expt_1000_bf_scaffold_7103_21
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22838..25297
DNA (2460bp) protein (820aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ95_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL89386.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
Displaying 21 items

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