ggKbase home page

SCNpilot_expt_1000_bf_scaffold_7726

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7726_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..269
DNA (267bp) protein (89aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Probable phosphoketolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0R0_9GAMM
phosphoketolase
SCNpilot_expt_1000_bf_scaffold_7726_2
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(370..1239)
DNA (870bp) protein (290aa)
id=24499993 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_expt_1000_bf_scaffold_7726_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1271..2083
DNA (813bp) protein (271aa)
Probable phosphoketolase {ECO:0000256|HAMAP-Rule:MF_01403}; EC=4.1.2.- {ECO:0000256|HAMAP-Rule:MF_01403};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Probable phosphoketolase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWI1_9GAMM
phosphoketolase
SCNpilot_expt_1000_bf_scaffold_7726_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2097..3173)
DNA (1077bp) protein (359aa)
ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000372B9EB
Uncharacterized protein {ECO:0000313|EMBL:AHX16254.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_expt_1000_bf_scaffold_7726_5
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3363..4085
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000362D5F4
Crp/Fnr family transcriptional regulator; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_expt_1000_bf_scaffold_7726_6
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4092..4826)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003819B29
Histidine kinase {ECO:0000313|EMBL:EYR70225.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
histidine kinase
SCNpilot_expt_1000_bf_scaffold_7726_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

4967..5686
DNA (720bp) protein (240aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
SCNpilot_expt_1000_bf_scaffold_7726_8
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6154..6870)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344DA41 rbh
ompR; putative transcriptional regulatory protein OmpR
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_expt_1000_bf_scaffold_7726_9
Pseudomonas sp. EGD-AK9, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7068..8018
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. EGD-AK9 RepID=U2B835_9PSED
Uncharacterized protein {ECO:0000313|EMBL:ERI53222.1}; TaxID=1386078 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. EGD-AK9.;"
universal stress protein, UspA family
SCNpilot_expt_1000_bf_scaffold_7726_10
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8029..8418
DNA (390bp) protein (130aa)
conjugal transfer protein TraR n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D4183
NODE_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96230.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
C4-type zinc finger DksA/TraR family protein
SCNpilot_expt_1000_bf_scaffold_7726_11
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8528..9181
DNA (654bp) protein (218aa)
Putative transport associated protein n=1 Tax=Ralstonia solanacearum RepID=D8NSW5_RALSL
transport associated protein
Putative transport associated protein {ECO:0000313|EMBL:CBJ50910.1}; TaxID=305 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (Pseudomonas solanacearum).;"
SCNpilot_expt_1000_bf_scaffold_7726_12
unknown

Not on your lists

9250..9330
DNA (81bp) protein (27aa)

This feature has no annotations

Displaying 12 items

View Taxonomy