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SCNpilot_expt_1000_bf_scaffold_6288

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6288_1
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..1758
DNA (1758bp) protein (586aa)
FimV N-terminal domain protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L1M2_FRAAD
Uncharacterized protein {ECO:0000313|EMBL:KGI77734.1}; Flags: Fragment;; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
FimV N-terminal domain-containing protein; K08086 pilus assembly protein FimV
SCNpilot_expt_1000_bf_scaffold_6288_2
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1773..2546
DNA (774bp) protein (258aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
tRNA pseudouridine synthase A n=1 Tax=Dyella ginsengisoli RepID=UPI00035E89A3
pseudouridylate synthase I
SCNpilot_expt_1000_bf_scaffold_6288_3
unknown

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comp(2498..3034)
DNA (537bp) protein (179aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6288_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3144..4175
DNA (1032bp) protein (344aa)
Pass1-like protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRE1_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_6288_5
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4268..5656)
DNA (1389bp) protein (463aa)
MFS transporter, SP family protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVX3_9GAMM
D-galactose transporter {ECO:0000313|EMBL:GAN44973.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
MFS transporter, SP family; K08137 MFS transporter, SP family, galactose:H+ symporter
SCNpilot_expt_1000_bf_scaffold_6288_6
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5719..7392)
DNA (1674bp) protein (558aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030750FE
Trehalase {ECO:0000313|EMBL:AIF47010.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
neutral trehalase
SCNpilot_expt_1000_bf_scaffold_6288_7
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7565..8605)
DNA (1041bp) protein (347aa)
LacI family transcription regulator n=1 Tax=Dyella ginsengisoli RepID=UPI00034D875D
LacI family transcriptional regulator {ECO:0000313|EMBL:KGI77569.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6288_8
unknown

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comp(8583..9179)
DNA (597bp) protein (199aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6288_9
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9283..9906
DNA (624bp) protein (208aa)
TonB-denpendent receptor n=1 Tax=Dyella japonica RepID=UPI000312F289
TonB-dependent receptor {ECO:0000313|EMBL:AIF47012.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
outer membrane receptor protein
Displaying 9 items

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