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SCNpilot_expt_1000_bf_scaffold_6297

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6297_1
Salinisphaera hydrothermalis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

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296..1744
DNA (1449bp) protein (483aa)
hydroxymethylglutaryl-coenzyme A synthase family protein; K01641 hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] rbh
hydroxymethylglutaryl-CoA synthase n=1 Tax=Nevskia ramosa RepID=UPI0003B37BBF rbh
Hydroxymethylglutaryl-coenzyme A synthase family protein {ECO:0000313|EMBL:KEZ77083.1}; TaxID=1304275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
SCNpilot_expt_1000_bf_scaffold_6297_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1720..2319)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003479597
Pilus biosynthesis protein {ECO:0000313|EMBL:GAN45217.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
prepilin-type N-terminal cleavage/methylation domain-containing protein
SCNpilot_expt_1000_bf_scaffold_6297_3
Synechococcus sp. WH 5701, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(2460..5831)
DNA (3372bp) protein (1124aa)
Lysozyme {ECO:0000256|RuleBase:RU003788}; EC=3.2.1.17 {ECO:0000256|RuleBase:RU003788};; TaxID=69042 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. WH 5701.;"
Lysozyme n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YYR1_9SYNE rbh
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_6297_4
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5828..6916)
DNA (1089bp) protein (363aa)
TIR protein n=2 Tax=Burkholderia RepID=I5CEK1_9BURK
TIR protein {ECO:0000313|EMBL:EUC19098.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6297_5
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7383..9395
DNA (2013bp) protein (671aa)
UvrABC system protein B n=1 Tax=Rhodanobacter denitrificans RepID=I4WYQ2_9GAMM
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Excinuclease ABC subunit B
SCNpilot_expt_1000_bf_scaffold_6297_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9539..10288
DNA (750bp) protein (250aa)
Putative glutathione S-transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF02_9GAMM
Putative glutathione S-transferase {ECO:0000313|EMBL:EIL98043.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glutathione S-transferase
SCNpilot_expt_1000_bf_scaffold_6297_7
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10299..11285)
DNA (987bp) protein (329aa)
glk; glucokinase (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2]
Glucokinase n=1 Tax=Reinekea blandensis MED297 RepID=A4BGM8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAN44986.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
SCNpilot_expt_1000_bf_scaffold_6297_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11292..12356)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000348F179
LacI family transcriptional regulator {ECO:0000313|EMBL:EIL96716.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6297_9
unknown

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comp(12443..12583)
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6297_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12580..14235)
DNA (1656bp) protein (552aa)
Alpha-glucosidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7N0_9GAMM rbh
glycosidase
Glycosidase {ECO:0000313|EMBL:AGG90167.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_6297_11
unknown

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14360..15301
DNA (942bp) protein (314aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6297_12
unknown

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comp(15403..16518)
DNA (1116bp) protein (372aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6297_13

Not on your lists

16633..17529
DNA (897bp) protein (299aa)
TonB-dependent receptor (Fragment) n=1 Tax=mine drainage metagenome RepID=T1BXV9_9ZZZZ
TonB-dependent receptor {ECO:0000313|EMBL:EQD77836.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_6297_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17618..19189
DNA (1572bp) protein (524aa)
Tryptophan halogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WQW4_9GAMM
Tryptophan halogenase
Tryptophan halogenase {ECO:0000313|EMBL:AGG90169.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_6297_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19186..20745
DNA (1560bp) protein (520aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Alpha amylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7N2_9GAMM rbh
glycosidase
SCNpilot_expt_1000_bf_scaffold_6297_16
unknown

Not on your lists

comp(20747..22006)
DNA (1260bp) protein (420aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6297_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22180..23115
DNA (936bp) protein (312aa)
Alpha-glucosidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7N3_9GAMM
Alpha-glucosidase {ECO:0000313|EMBL:EIL95474.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
family 31 glycosyl hydrolase, alpha-glucosidase
SCNpilot_expt_1000_bf_scaffold_6297_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23230..24951
DNA (1722bp) protein (574aa)
Glycoside hydrolase family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQW8_9GAMM
beta-xylosidase
Beta-xylosidase {ECO:0000313|EMBL:AGG90173.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 18 items

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