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SCNpilot_expt_1000_bf_scaffold_6368

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6368_1
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..446)
DNA (444bp) protein (148aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS62485.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
id=12551779 bin=BDI tax=BDI organism_group=Betaproteobacteria
SCNpilot_expt_1000_bf_scaffold_6368_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

575..2182
DNA (1608bp) protein (536aa)
Acriflavin resistance protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VT26_9GAMM
Multidrug transporter AcrB {ECO:0000313|EMBL:GAN45684.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
cation/multidrug efflux pump
SCNpilot_expt_1000_bf_scaffold_6368_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2354..3670
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWI7_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL91578.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6368_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3678..4226
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTZ9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02941.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_1000_bf_scaffold_6368_5
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4644..4916
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0Q4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGM51219.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6368_6
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4928..5563
DNA (636bp) protein (212aa)
Cytochrome B561 n=1 Tax=Rhodanobacter denitrificans RepID=I4WYN3_9GAMM
Cytochrome B561 {ECO:0000313|EMBL:KGM53565.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
cytochrome B561
SCNpilot_expt_1000_bf_scaffold_6368_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5553..6251
DNA (699bp) protein (233aa)
Two component transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0Q6_9GAMM rbh
Two component transcriptional regulator {ECO:0000313|EMBL:EIL93047.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain rbh
SCNpilot_expt_1000_bf_scaffold_6368_8
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6248..7591
DNA (1344bp) protein (448aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
QseC n=1 Tax=Rhodanobacter denitrificans RepID=I4WYN5_9GAMM
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_6368_9
CG_Desulfob_01, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7905..8381
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Desulfobacter curvatus RepID=UPI000376CE3E
hypothetical protein
Tax=CG_Desulfob_01
SCNpilot_expt_1000_bf_scaffold_6368_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8480..9052)
DNA (573bp) protein (191aa)
GCN5-like N-acetyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WS32_9GAMM
sortase-like acyltransferase
Sortase-like acyltransferase {ECO:0000313|EMBL:AGG89427.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_6368_11
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9249..9488
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VI40_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGM51836.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6368_12
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9422..11125)
DNA (1704bp) protein (568aa)
C4-dicarboxylate transporter/malic acid transport protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21QW7_RHOFD
C4-dicarboxylate transporter/malic acid transport protein
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_1000_bf_scaffold_6368_13
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11168..11884)
DNA (717bp) protein (239aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B5K8_9RHIZ
PpiC-type peptidyl-prolyl cis-trans isomerase
SCNpilot_expt_1000_bf_scaffold_6368_14
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11881..12588)
DNA (708bp) protein (236aa)
Respiratory nitrate reductase subunit gamma n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B7R5_9RHIZ
respiratory nitrate reductase subunit gamma
Respiratory nitrate reductase subunit gamma {ECO:0000313|EMBL:AGK58307.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_6368_15
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12608..13249)
DNA (642bp) protein (214aa)
Nitrate reductase molybdenum cofactor assembly chaperone n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BCP6_9RHIZ
nitrate reductase molybdenum cofactor assembly chaperone
Nitrate reductase molybdenum cofactor assembly chaperone {ECO:0000313|EMBL:AGK58306.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_6368_16
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13508..18757)
DNA (5250bp) protein (1750aa)
Respiratory nitrate reductase subunit alpha NarG n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B455_9RHIZ
respiratory nitrate reductase subunit alpha NarG
Respiratory nitrate reductase subunit alpha NarG {ECO:0000313|EMBL:AGK58304.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_6368_17
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18770..20008)
DNA (1239bp) protein (413aa)
Major facilitator superfamily protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYZ1_9BRAD
Major facilitator superfamily protein {ECO:0000313|EMBL:EAQ34794.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
major facilitator transporter; K02575 MFS transporter, NNP family, nitrate/nitrite transporter
SCNpilot_expt_1000_bf_scaffold_6368_18
unknown

Not on your lists

20332..20832
DNA (501bp) protein (167aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6368_19
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20911..21483)
DNA (573bp) protein (191aa)
Uncharacterized protein n=2 Tax=Rhizobium fredii RepID=G9ADT0_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEO91762.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_6368_20
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21827..22570
DNA (744bp) protein (248aa)
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WTT2_PSEUU
Monooxygenase {ECO:0000313|EMBL:EXL07941.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
Displaying 20 items

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