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SCNpilot_expt_1000_bf_scaffold_6417

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6417_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..663)
DNA (663bp) protein (221aa)
Copper-resistance protein, CopA family n=1 Tax=Rhodanobacter denitrificans RepID=M4NFL4_9GAMM
copper-resistance protein, CopA family
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_6417_2
unknown

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comp(777..1208)
DNA (432bp) protein (144aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6417_3
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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1473..2459
DNA (987bp) protein (329aa)
Cointegrase id=2988925 bin=GWF1_Xanthomonadales_69_6 species=Xanthomonas oryzae genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
cointegrase
Tax=GWF1_Xanthomonadales_69_6_curated
SCNpilot_expt_1000_bf_scaffold_6417_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2561..2746)
DNA (186bp) protein (62aa)
Putative DNA-binding protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNH5_9GAMM
Putative DNA-binding protein {ECO:0000313|EMBL:EIL88766.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6417_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2869..3210
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WGY7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90926.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_6417_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3283..4038
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003698A10
Uncharacterized protein {ECO:0000313|EMBL:EJP79488.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
SseB protein
SCNpilot_expt_1000_bf_scaffold_6417_7
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4195..4725
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003768C6A
Uncharacterized protein {ECO:0000313|EMBL:KGO99845.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
SCNpilot_expt_1000_bf_scaffold_6417_8
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4788..7730)
DNA (2943bp) protein (981aa)
Transposase n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5C0L8_9GAMM rbh
Transposase {ECO:0000313|EMBL:ESS73624.1}; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
transposase Tn3 family protein rbh
SCNpilot_expt_1000_bf_scaffold_6417_9
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8073..8432
DNA (360bp) protein (120aa)
TonB-dependent receptor n=1 Tax=mine drainage metagenome RepID=T1B0V5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:AHX16286.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCNpilot_expt_1000_bf_scaffold_6417_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8522..9511)
DNA (990bp) protein (330aa)
Putative cointegrase resolution protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRW1_9GAMM
Putative cointegrase resolution protein {ECO:0000313|EMBL:EIL89952.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Plasmid replication region DNA-binding N-term rbh
SCNpilot_expt_1000_bf_scaffold_6417_11

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9683..10831
DNA (1149bp) protein (383aa)
Phage integrase family protein n=4 Tax=mine drainage metagenome RepID=T0Y1N3_9ZZZZ rbh
Phage integrase family protein {ECO:0000313|EMBL:EQD25932.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
site-specific recombinase XerD
SCNpilot_expt_1000_bf_scaffold_6417_12
Pseudomonas sp. 12M76_air, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10828..11817)
DNA (990bp) protein (330aa)
arylsulfatase n=1 Tax=Halomonas zhanjiangensis RepID=UPI000377D40E
Arsenical pump membrane protein {ECO:0000313|EMBL:CEA04413.1}; TaxID=1461581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 12M76_air.;"
arsB; arsenite-antimonite efflux pump ArsB; K03893 arsenical pump membrane protein
Displaying 12 items

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