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SCNpilot_expt_1000_bf_scaffold_2128

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2128_1
unknown

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comp(2..73)
DNA (72bp) protein (24aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2128_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(75..1136)
DNA (1062bp) protein (354aa)
heavy metal efflux system protein; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB id=12493238 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
heavy metal efflux system protein; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2128_3
unknown

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comp(1431..1721)
DNA (291bp) protein (97aa)
copper-exporting ATPase (EC:3.6.3.4) id=12493237 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
SCNpilot_expt_1000_bf_scaffold_2128_4
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1821..2756)
DNA (936bp) protein (312aa)
aniA; multicopper oxidase type 1; K00368 nitrite reductase (NO-forming) [EC:1.7.2.1] id=12493236 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
copper-containing nitrite reductase (EC:1.7.2.1); K00368 nitrite reductase (NO-forming) [EC:1.7.2.1]
Putative copper-containing nitrite reductase {ECO:0000313|EMBL:CAL63352.1}; EC=1.7.2.1 {ECO:0000313|EMBL:CAL63352.1};; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
SCNpilot_expt_1000_bf_scaffold_2128_5
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2773..3165)
DNA (393bp) protein (131aa)
cytochrome c, class IC:cytochrome c, class I; K00406 cytochrome c oxidase cbb3-type subunit III id=12493235 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cytochrome c, class IC:cytochrome c, class I; K00406 cytochrome c oxidase cbb3-type subunit III
Cytochrome c, class IC:Cytochrome c, class I {ECO:0000313|EMBL:CAD84836.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_1000_bf_scaffold_2128_6
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3168..3863)
DNA (696bp) protein (232aa)
cytochrome c, class I id=12493234 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
cytochrome c, class I rbh
Cytochrome c, class I {ECO:0000313|EMBL:CAD84837.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_1000_bf_scaffold_2128_7
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3879..4934)
DNA (1056bp) protein (352aa)
multicopper oxidase type 1 id=12493233 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
multicopper oxidase type 1 rbh
Putative multicopper oxidase {ECO:0000313|EMBL:CAL63355.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
SCNpilot_expt_1000_bf_scaffold_2128_8

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5126..5617
DNA (492bp) protein (164aa)
nsrR; HTH-type transcriptional regulator NsrR id=12493232 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
HTH-type transcriptional regulator nsrR {ECO:0000313|EMBL:CBI09185.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
nsrR; HTH-type transcriptional regulator NsrR
SCNpilot_expt_1000_bf_scaffold_2128_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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5741..7138
DNA (1398bp) protein (466aa)
outer membrane efflux protein id=12493231 bin=THIO_HI species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
outer membrane efflux protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_2128_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7149..8252
DNA (1104bp) protein (368aa)
putative Secretion protein HlyD id=12493230 bin=THIO_HI species=Thiomonas arsenitoxydans genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
putative Secretion protein HlyD rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_2128_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8245..11529
DNA (3285bp) protein (1095aa)
acriflavin resistance protein id=12493229 bin=THIO_HI species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
acriflavin resistance protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_2128_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11580..11798
DNA (219bp) protein (73aa)
hypothetical protein id=12493228 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2128_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11809..12222
DNA (414bp) protein (138aa)
rhodanese-like protein id=12493227 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rhodanese-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2128_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12245..12382
DNA (138bp) protein (46aa)
glutaredoxin, GrxC; K03676 glutaredoxin 3 id=12493226 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
glutaredoxin, GrxC; K03676 glutaredoxin 3
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying 14 items

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