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SCNpilot_expt_1000_bf_scaffold_2310

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2310_1
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..842)
DNA (840bp) protein (280aa)
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein id=12492982 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
Tax=RBG_16_Gamma2_64_11_curated
SCNpilot_expt_1000_bf_scaffold_2310_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(886..1368)
DNA (483bp) protein (161aa)
signal peptide protein id=12492983 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
signal peptide protein
Possible signal peptide protein {ECO:0000313|EMBL:AAZ96861.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_2310_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1365..2588)
DNA (1224bp) protein (408aa)
BNR repeat-containing protein id=12492984 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Putative signal peptide protein {ECO:0000313|EMBL:CCU62360.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
BNR repeat-containing protein
SCNpilot_expt_1000_bf_scaffold_2310_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2772..3551)
DNA (780bp) protein (260aa)
dihydropteroate synthase (EC:2.5.1.15); K00796 dihydropteroate synthase [EC:2.5.1.15] id=12492985 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
dihydropteroate synthase (EC:2.5.1.15); K00796 dihydropteroate synthase [EC:2.5.1.15]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2310_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3602..4141)
DNA (540bp) protein (180aa)
Phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] id=12492986 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2310_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4138..4938)
DNA (801bp) protein (267aa)
formylmethanofuran dehydrogenase subunit C (EC:1.2.99.5); K00202 formylmethanofuran dehydrogenase subunit C [EC:1.2.99.5] id=12492987 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
formylmethanofuran dehydrogenase subunit C (EC:1.2.99.5); K00202 formylmethanofuran dehydrogenase subunit C [EC:1.2.99.5]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2310_7
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4935..5831)
DNA (897bp) protein (299aa)
formylmethanofuran--tetrahydromethanopterin formyltransferase (EC:2.3.1.101); K00672 formylmethanofuran--tetrahydromethanopterin N-formyltransferase [EC:2.3.1.101] id=12492988 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
formylmethanofuran--tetrahydromethanopterin formyltransferase (EC:2.3.1.101); K00672 formylmethanofuran--tetrahydromethanopterin N-formyltransferase [EC:2.3.1.101]
Formylmethanofuran--tetrahydromethanopterin formyltransferase; EC=2.3.1.101;; H4MPT formyltransferase; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
SCNpilot_expt_1000_bf_scaffold_2310_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5828..7492)
DNA (1665bp) protein (555aa)
formylmethanofurane dehydrogenase subunit A; K00200 formylmethanofuran dehydrogenase subunit A [EC:1.2.99.5] id=12492989 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
formylmethanofurane dehydrogenase subunit A; K00200 formylmethanofuran dehydrogenase subunit A [EC:1.2.99.5]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2310_9
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7479..8672)
DNA (1194bp) protein (398aa)
formylmethanofuran dehydrogenase (EC:1.2.99.5); K00201 formylmethanofuran dehydrogenase subunit B [EC:1.2.99.5] id=12492990 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
formylmethanofuran dehydrogenase subunit B (EC:1.2.99.5); K00201 formylmethanofuran dehydrogenase subunit B [EC:1.2.99.5]
Tax=BJP_S1_SUB10_Methylophilales_55_32
SCNpilot_expt_1000_bf_scaffold_2310_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9010..9996
DNA (987bp) protein (329aa)
beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein id=12492991 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2310_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10019..10591
DNA (573bp) protein (191aa)
mtdB; methylene tetrahydromethanopterin dehydrogenase MtdB (EC:1.5.1.-); K10714 methylene-tetrahydromethanopterin dehydrogenase [EC:1.5.1.-] id=12492992 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
mtdB; methylene tetrahydromethanopterin dehydrogenase MtdB (EC:1.5.1.-); K10714 methylene-tetrahydromethanopterin dehydrogenase [EC:1.5.1.-]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2310_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10665..10877
DNA (213bp) protein (71aa)
mtdB; methylene tetrahydromethanopterin dehydrogenase MtdB (EC:1.5.1.-); K10714 methylene-tetrahydromethanopterin dehydrogenase [EC:1.5.1.-] id=12492992 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
methylene-tetrahydromethanopterin dehydrogenase; K10714 methylene-tetrahydromethanopterin dehydrogenase [EC:1.5.1.-]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2310_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10867..12054
DNA (1188bp) protein (396aa)
hypothetical protein id=12492993 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2310_14
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12051..13025
DNA (975bp) protein (325aa)
methenyltetrahydromethanopterin cyclohydrolase (EC:3.5.4.27); K01499 methenyltetrahydromethanopterin cyclohydrolase [EC:3.5.4.27] id=12492994 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Methenyltetrahydromethanopterin cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_00486}; EC=3.5.4.27 {ECO:0000256|HAMAP-Rule:MF_00486};; Methenyl-H4MPT cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_00486}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
methenyltetrahydromethanopterin cyclohydrolase (EC:3.5.4.27); K01499 methenyltetrahydromethanopterin cyclohydrolase [EC:3.5.4.27] rbh
SCNpilot_expt_1000_bf_scaffold_2310_15
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13022..13390
DNA (369bp) protein (123aa)
RimK family alpha-L-glutamate ligase id=12492995 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Conserved protein (Orf5) involved in biosynthesis of tetrahydromethanopterin {ECO:0000313|EMBL:CCE24107.1}; TaxID=1091494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM; B-2133 / 20Z).;"
SCNpilot_expt_1000_bf_scaffold_2310_16
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13423..13932
DNA (510bp) protein (170aa)
RimK family alpha-L-glutamate ligase id=12492995 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RimK family alpha-L-glutamate ligase
Alpha-L-glutamate ligase, RimK family {ECO:0000313|EMBL:ACT50746.1}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
SCNpilot_expt_1000_bf_scaffold_2310_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13929..14840
DNA (912bp) protein (304aa)
hypothetical protein; K05966 triphosphoribosyl-dephospho-CoA synthase [EC:2.7.8.25] id=12492996 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein; K05966 triphosphoribosyl-dephospho-CoA synthase [EC:2.7.8.25]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2310_18
unknown

Not on your lists

14833..14949
DNA (117bp) protein (39aa)
id=12492997 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria
SCNpilot_expt_1000_bf_scaffold_2310_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14949..15461
DNA (513bp) protein (171aa)
formaldehyde-activating enzyme; K10713 formaldehyde-activating enzyme [EC:4.3.-.-] id=12492998 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
formaldehyde-activating enzyme; K10713 formaldehyde-activating enzyme [EC:4.3.-.-]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2310_20
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15476..16699
DNA (1224bp) protein (408aa)
queuosine biosynthesis protein QueD; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] id=12492999 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
queuosine biosynthesis protein QueD; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12]
Putative uncharacterized protein {ECO:0000313|EMBL:EGV33362.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
SCNpilot_expt_1000_bf_scaffold_2310_21
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16608..17111)
DNA (504bp) protein (168aa)
histidine biosynthesis protein; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] id=12493000 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
histidine biosynthesis protein; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
Histidine biosynthesis protein {ECO:0000313|EMBL:ACL60835.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_expt_1000_bf_scaffold_2310_22
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17135..17347)
DNA (213bp) protein (71aa)
histidine biosynthesis protein; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] id=12493000 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phosphoribosylformimino-5-aminoimidazole carboxamide isomerase family protein; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
Tax=BJP_S1_SUB10_Methylophilales_55_32
SCNpilot_expt_1000_bf_scaffold_2310_23
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17394..18335
DNA (942bp) protein (314aa)
hypothetical protein id=12493001 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Uncharacterized protein {ECO:0000313|EMBL:EGF31250.1}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacterium IMCC9480.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2310_24
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18332..19426
DNA (1095bp) protein (365aa)
H4MPT-linked C1 transfer pathway protein id=12493002 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
H4MPT-linked C1 transfer pathway protein
H4MPT-linked C1 transfer pathway protein {ECO:0000313|EMBL:ACB22975.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCNpilot_expt_1000_bf_scaffold_2310_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19417..19689
DNA (273bp) protein (91aa)
pabB; para-aminobenzoate synthase, component I (EC:4.1.3.-); K01665 para-aminobenzoate synthetase component I [EC:2.6.1.85] id=12493003 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
pabB; para-aminobenzoate synthase, component I (EC:4.1.3.-); K01665 para-aminobenzoate synthetase component I [EC:2.6.1.85]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying 25 items

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