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SCNpilot_expt_1000_bf_scaffold_2930

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2930_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25..462
DNA (438bp) protein (146aa)
putative cytochrome c-type protein id=12493671 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative cytochrome c-type protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2930_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(575..1174)
DNA (600bp) protein (200aa)
hypothetical protein id=12493670 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2930_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1174..1503)
DNA (330bp) protein (110aa)
hypothetical protein id=12493669 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2930_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1768..2289)
DNA (522bp) protein (174aa)
putative nitrous oxide reduction lipoprotein id=12493667 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
putative nitrous oxide reduction lipoprotein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2930_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2286..3101)
DNA (816bp) protein (272aa)
ABC transporter transmembrane protein; K01992 ABC-2 type transport system permease protein id=12493666 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ABC transporter transmembrane protein; K01992 ABC-2 type transport system permease protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2930_6
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3111..4052)
DNA (942bp) protein (314aa)
ABC transporter; K01990 ABC-2 type transport system ATP-binding protein id=12493665 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ABC transporter {ECO:0000313|EMBL:ENO89107.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
ABC transporter; K01990 ABC-2 type transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2930_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4067..5287)
DNA (1221bp) protein (407aa)
nitrous oxidase accessory protein; K07218 nitrous oxidase accessory protein id=12493664 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
nitrous oxidase accessory protein; K07218 nitrous oxidase accessory protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_2930_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5275..7956)
DNA (2682bp) protein (894aa)
transmembrane regulatory NosR transcription regulator protein id=12493663 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
transmembrane regulatory NosR transcription regulator protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_2930_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8112..10082)
DNA (1971bp) protein (657aa)
nitrous-oxide reductase (EC:1.7.99.6); K00376 nitrous-oxide reductase [EC:1.7.2.4] id=12493662 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
nitrous-oxide reductase (EC:1.7.99.6); K00376 nitrous-oxide reductase [EC:1.7.2.4]
Nitrous-oxide reductase {ECO:0000313|EMBL:AAZ97342.1}; EC=1.7.2.4 {ECO:0000313|EMBL:AAZ97342.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_2930_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10430..12358
DNA (1929bp) protein (643aa)
periplasmic sensor signal transduction histidine kinase; K07673 two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] id=12493661 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
periplasmic sensor signal transduction histidine kinase; K07673 two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_2930_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12355..13035
DNA (681bp) protein (227aa)
transcriptional regulator NarL; K07684 two-component system, NarL family, nitrate/nitrite response regulator NarL id=12493660 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
transcriptional regulator NarL; K07684 two-component system, NarL family, nitrate/nitrite response regulator NarL
Two Component Transcriptional Regulator, LuxR family {ECO:0000313|EMBL:AAZ97352.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_2930_12
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13440..15284
DNA (1845bp) protein (615aa)
carbamoyltransferase; K00612 carbamoyltransferase [EC:2.1.3.-] rbh
Carbamoyltransferase n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E774_9GAMM rbh
Tax=RBG_16_Gamma2_60_9_curated
SCNpilot_expt_1000_bf_scaffold_2930_13
CG_Cyano_01, Cyanobacteria, Bacteria

Not on your lists

15287..15694
DNA (408bp) protein (136aa)
Uncharacterized protein n=3 Tax=Arthrospira RepID=K1WSI3_ARTPT
hypothetical protein
Tax=CG_Cyano_01
SCNpilot_expt_1000_bf_scaffold_2930_14
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15694..15846
DNA (153bp) protein (51aa)
Putative uncharacterized protein n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E776_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EGV28043.1}; Flags: Precursor;; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2930_15
CG_Pacebac_02, Pacebacteria, Microgenomates, Bacteria

Not on your lists

15896..17071
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI0003790A8D
Tax=CG_Pacebac_02
SCNpilot_expt_1000_bf_scaffold_2930_16
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17254..17628)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S498_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KGD58815.1}; TaxID=28450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (Pseudomonas pseudomallei).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2930_17
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17625..18236)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FZA4_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EDM80988.1}; TaxID=391625 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2930_18
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18342..19235)
DNA (894bp) protein (298aa)
ferric reductase n=1 Tax=Methyloversatilis universalis RepID=UPI000379D9E1
Putative ferric reductase {ECO:0000313|EMBL:EGK71288.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
ferric reductase
SCNpilot_expt_1000_bf_scaffold_2930_19
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19791..20135)
DNA (345bp) protein (115aa)
cupin n=1 Tax=Thiobacillus denitrificans RepID=UPI000363965A
Cupin domain protein {ECO:0000313|EMBL:GAM10196.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2930_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20243..20818)
DNA (576bp) protein (192aa)
NADPH-dependent FMN reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUS3_9GAMM rbh
putative flavoprotein rbh
Putative flavoprotein {ECO:0000313|EMBL:AGG87276.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_2930_21
Desulfurispirillum indicum, Desulfurispirillum, Chrysiogenales, Chrysiogenetes, Chrysiogenetes, Bacteria

Not on your lists

comp(21064..21384)
DNA (321bp) protein (107aa)
Small multidrug resistance protein n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W6M3_DESIS
small multidrug resistance protein; K11741 quaternary ammonium compound-resistance protein SugE
Small multidrug resistance protein {ECO:0000313|EMBL:ADU65023.1}; TaxID=653733 species="Bacteria; Chrysiogenetes; Chrysiogenales; Chrysiogenaceae; Desulfurispirillum.;" source="Desulfurispirillum indicum (strain ATCC BAA-1389 / S5).;"
SCNpilot_expt_1000_bf_scaffold_2930_22
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(21454..22200)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QWT0_ISOPI rbh
hypothetical protein; K06927 rbh
Uncharacterized protein {ECO:0000313|EMBL:ADV62980.1}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
SCNpilot_expt_1000_bf_scaffold_2930_23
Acinetobacter sp. CIP 64.7, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22265..22516)
DNA (252bp) protein (84aa)
Uncharacterized protein n=3 Tax=Acinetobacter RepID=N8Q8R4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ENX31102.1}; TaxID=1144673 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter sp. CIP 64.7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2930_24
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(22660..23181)
DNA (522bp) protein (174aa)
yncA; phosphinothricin acetyltransferase; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183]
Sortase-like acyltransferase n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9EQA2_9CYAN
Sortase-like acyltransferase {ECO:0000313|EMBL:EKU99259.1}; TaxID=102129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7375.;"
SCNpilot_expt_1000_bf_scaffold_2930_25
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(23778..24335)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0ADE3_NITEC
Uncharacterized protein {ECO:0000313|EMBL:GAN34828.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2930_26
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24459..25259)
DNA (801bp) protein (267aa)
Putative Membrane protein-like n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0U094_9BRAD rbh
Putative Membrane protein-like {ECO:0000313|EMBL:CCE12132.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
membrane protein
SCNpilot_expt_1000_bf_scaffold_2930_27
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25603..25989)
DNA (387bp) protein (129aa)
Putative uncharacterized protein id=3247135 bin=GWC2_Deltaproteobacteria_66_88 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWA2_Deltaproteobacteria_65_63_curated
SCNpilot_expt_1000_bf_scaffold_2930_28
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26404..26673)
DNA (270bp) protein (90aa)
Addiction module antidote protein, HigA family n=1 Tax=Pseudomonas fluorescens Q2-87 RepID=J2YCS1_PSEFL
Addiction module antidote protein, HigA family {ECO:0000313|EMBL:EJL05066.1}; TaxID=1038922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens Q2-87.;"
Cro/Ci family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2930_29
Pseudomonas chloritidismutans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26673..26852)
DNA (180bp) protein (60aa)
Addiction module killer protein n=1 Tax=Pseudomonas chloritidismutans AW-1 RepID=V4QHQ5_PSECO
Addiction module killer protein {ECO:0000313|EMBL:ESR01328.1}; TaxID=1263865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chloritidismutans AW-1.;"
plasmid maintenance system killer protein; K07334 proteic killer suppression protein
Displaying 29 items

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