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SCNpilot_expt_1000_bf_scaffold_1386

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1386_1
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..218
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IL20_BORPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP42528.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_1386_2
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

215..748
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EL24_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ELA00223.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1386_3
Pseudomonas xanthomarina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

745..3726
DNA (2982bp) protein (994aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BTU0_DELAS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CEG52183.1}; TaxID=271420 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas xanthomarina.;"
SCNpilot_expt_1000_bf_scaffold_1386_4
Halomonas sp. A3H3, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3782..5149)
DNA (1368bp) protein (456aa)
Putative transcriptional regulatory protein PtsJ n=1 Tax=Halomonas sp. A3H3 RepID=T2L7U4_9GAMM rbh
Putative transcriptional regulatory protein PtsJ {ECO:0000313|EMBL:CDG53168.1}; TaxID=1346287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. A3H3.;"
transcriptional regulatory protein PtsJ rbh
SCNpilot_expt_1000_bf_scaffold_1386_5
Halomonas sp. A3H3, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5199..6092
DNA (894bp) protein (298aa)
dihydrodipicolinate synthase n=1 Tax=Halomonas lutea RepID=UPI00035F73FA rbh
Uncharacterized protein {ECO:0000313|EMBL:CDG53169.1}; TaxID=1346287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. A3H3.;"
dapA; dihydrodipicolinate synthase rbh
SCNpilot_expt_1000_bf_scaffold_1386_6
Halomonas sp. A3H3, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6127..7359
DNA (1233bp) protein (411aa)
Putative major facilitator superfamily transporter n=1 Tax=Halomonas sp. A3H3 RepID=T2L8P6_9GAMM rbh
Putative major facilitator superfamily transporter {ECO:0000313|EMBL:CDG53170.1}; TaxID=1346287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. A3H3.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1386_7
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7408..8658)
DNA (1251bp) protein (417aa)
L-lactate permease n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y283_PARAH rbh
L-lactate permease rbh
L-lactate permease {ECO:0000313|EMBL:AGT09865.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_1386_8
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8927..9256)
DNA (330bp) protein (110aa)
Antioxidant, AhpC/TSA family n=2 Tax=Nitrosococcus oceani RepID=B6C1N3_9GAMM
hypothetical protein
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:KFI19596.1}; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani C-27.;"
SCNpilot_expt_1000_bf_scaffold_1386_9
Pseudomonas taeanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9222..9488)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8TDM4_9GAMM
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:KFX69718.1}; TaxID=1395571 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas taeanensis MS-3.;"
thioredoxin
SCNpilot_expt_1000_bf_scaffold_1386_10
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9591..9827)
DNA (237bp) protein (79aa)
Thioredoxin n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z498_9RHOO
Thioredoxin {ECO:0000313|EMBL:CDI01602.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1386_11
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9938..11239)
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI000381A9F1
GntR family transcription regulator protein {ECO:0000313|EMBL:EZP38943.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1386_12
Advenella mimigardefordensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11346..12161
DNA (816bp) protein (272aa)
Alanine racemase n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3U7V4_ADVKW rbh
Putative pyridoxal-phosphate protein, YggS Family {ECO:0000313|EMBL:AHG62452.1}; TaxID=1247726 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella mimigardefordensis DPN7.;"
alanine racemase rbh
SCNpilot_expt_1000_bf_scaffold_1386_13
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12158..14323
DNA (2166bp) protein (722aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
Acetylornithine aminotransferase n=1 Tax=Pseudomonas aeruginosa VRFPA04 RepID=U5ARL6_PSEAI rbh
acetylornithine and succinylornithine aminotransferase rbh
SCNpilot_expt_1000_bf_scaffold_1386_14
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14382..15653
DNA (1272bp) protein (424aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
Serine hydroxymethyltransferase n=1 Tax=Pectobacterium carotovorum subsp. carotovorum PCC21 RepID=J7L364_PECCC rbh
glycine hydroxymethyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_1386_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15669..16613
DNA (945bp) protein (315aa)
Transcriptional regulator n=1 Tax=Pseudomonas aeruginosa BWHPSA011 RepID=U8WFB8_PSEAI rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEB83968.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_1000_bf_scaffold_1386_16
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16610..16888
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA011 RepID=U8WFV4_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:EXI88108.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1386_17
unknown

Not on your lists

17125..17184
DNA (60bp) protein (20aa)

This feature has no annotations

Displaying 17 items

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