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SCNpilot_expt_1000_bf_scaffold_3075

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3075_1
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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314..1246
DNA (933bp) protein (311aa)
VacJ-like lipoprotein; K04754 lipoprotein id=12495579 bin=THIO_HI species=unknown genus=unknown taxon_order=unknown taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
VacJ-like lipoprotein; K04754 lipoprotein
VacJ-like lipoprotein {ECO:0000313|EMBL:ABB75846.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_1000_bf_scaffold_3075_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1589..2656)
DNA (1068bp) protein (356aa)
ErfK/YbiS/YcfS/YnhG family protein id=12495580 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ErfK/YbiS/YcfS/YnhG family protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_3075_3
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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2671..3243
DNA (573bp) protein (191aa)
hypothetical protein id=12495581 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:CDI04009.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
ErfK/YbiS/YcfS/YnhG family protein
SCNpilot_expt_1000_bf_scaffold_3075_4
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3345..3791)
DNA (447bp) protein (149aa)
hypothetical protein id=12495582 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Lipoprotein, putative {ECO:0000313|EMBL:EEG08530.1}; Flags: Precursor;; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3075_5
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3899..5425)
DNA (1527bp) protein (509aa)
emrB; multidrug resistance protein B id=12495583 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Multidrug resistance protein B {ECO:0000313|EMBL:ERE07060.1}; TaxID=1388764 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans EGD-HP2.;"
multidrug resistance protein B; K03446 MFS transporter, DHA2 family, multidrug resistance protein B rbh
SCNpilot_expt_1000_bf_scaffold_3075_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5436..6578)
DNA (1143bp) protein (381aa)
efflux pump membrane protein; K03543 multidrug resistance protein A id=12495584 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
efflux pump membrane protein; K03543 multidrug resistance protein A
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_3075_7

Not on your lists

comp(6575..8002)
DNA (1428bp) protein (476aa)
efflux transporter, outer membrane factor lipoprotein, NodT family id=12495585 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Putative fusaric acid resistance protein fusA {ECO:0000313|EMBL:BAD81003.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
efflux transporter, outer membrane factor lipoprotein, NodT family
SCNpilot_expt_1000_bf_scaffold_3075_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7999..8508)
DNA (510bp) protein (170aa)
emrR; EmrR; K15974 MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB id=12495586 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
emrR; EmrR; K15974 MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying 8 items

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