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SCNpilot_expt_1000_bf_scaffold_3235

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Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3235_1
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..431
DNA (429bp) protein (143aa)
Cyclic di-GMP phosphodiesterase Gmr {ECO:0000313|EMBL:KFB68770.1}; EC=3.1.4.52 {ECO:0000313|EMBL:KFB68770.1};; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase id=12494869 bin=THIO_HI species=Janthinobacterium sp. CG3 genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative signaling protein
SCNpilot_expt_1000_bf_scaffold_3235_2
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

391..1326
DNA (936bp) protein (312aa)
response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase id=12494869 bin=THIO_HI species=Janthinobacterium sp. CG3 genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=CG_Beta_01
SCNpilot_expt_1000_bf_scaffold_3235_3
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1439..4372
DNA (2934bp) protein (978aa)
Hybrid sensor histidine kinase id=12494870 bin=THIO_HI species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Hybrid sensor histidine kinase
Hybrid sensor histidine kinase {ECO:0000313|EMBL:CBS91102.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_1000_bf_scaffold_3235_4
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4437..4658
DNA (222bp) protein (74aa)
hypothetical protein id=12494871 bin=THIO_HI species=Chromobacterium violaceum genus=Chromobacterium taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=536 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3235_5
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5918..6433
DNA (516bp) protein (172aa)
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain id=12494872 bin=THIO_HI species=Chitiniphilus shinanonensis genus=Chitiniphilus taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AEV26100.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_3235_6

Not on your lists

6507..6866
DNA (360bp) protein (120aa)
transposase IS4 family protein id=12494873 bin=THIO_HI species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=THIO_HI organism_group=Betaproteobacteria
Transposase IS4 family protein {ECO:0000313|EMBL:EQD71308.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transposase IS4 family protein
SCNpilot_expt_1000_bf_scaffold_3235_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7057..7485
DNA (429bp) protein (143aa)
nuoA; NADH dehydrogenase I subunit A (EC:1.6.5.3); K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3] id=12494874 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
nuoA; NADH dehydrogenase I subunit A (EC:1.6.5.3); K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_3235_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7493..7969
DNA (477bp) protein (159aa)
nuoB; NADH dehydrogenase subunit B (EC:1.6.5.3); K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] id=12494875 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
nuoB; NADH dehydrogenase subunit B (EC:1.6.5.3); K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_3235_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7978..8577
DNA (600bp) protein (200aa)
nuoC; NADH dehydrogenase subunit C (EC:1.6.5.3); K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] id=12494876 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
nuoC; NADH dehydrogenase subunit C (EC:1.6.5.3); K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_3235_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8577..8771
DNA (195bp) protein (65aa)
nuoD; NADH dehydrogenase subunit D (EC:1.6.5.3); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit D {ECO:0000255|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000255|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000255|HAMAP-Rule:MF_01358}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
NADH-quinone oxidoreductase subunit D n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=NUOD_THIDA
SCNpilot_expt_1000_bf_scaffold_3235_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8768..9811
DNA (1044bp) protein (348aa)
nuoD; NADH dehydrogenase subunit D (EC:1.6.5.3); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] id=12494877 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
nuoD; NADH dehydrogenase subunit D (EC:1.6.5.3); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_3235_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9811..10284
DNA (474bp) protein (158aa)
nuoE; NADH dehydrogenase subunit E (EC:1.6.5.3); K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3] id=12494878 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
nuoE; NADH dehydrogenase subunit E (EC:1.6.5.3); K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_3235_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10281..11561
DNA (1281bp) protein (427aa)
nuoF; NADH-quinone oxidoreductase subunit F (EC:1.6.5.3); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] id=12494879 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
nuoF; NADH-quinone oxidoreductase subunit F (EC:1.6.5.3); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3]
NADH-quinone oxidoreductase, chain F {ECO:0000313|EMBL:AAZ97100.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AAZ97100.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_3235_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11575..13929
DNA (2355bp) protein (785aa)
nuoG; NADH dehydrogenase subunit G (EC:1.6.5.3); K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3] id=12494880 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
nuoG; NADH dehydrogenase subunit G (EC:1.6.5.3); K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_3235_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13929..14945
DNA (1017bp) protein (339aa)
nuoH; NADH dehydrogenase I subunit H (EC:1.6.5.3); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] id=12494881 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
nuoH; NADH dehydrogenase I subunit H (EC:1.6.5.3); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_3235_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14973..15461
DNA (489bp) protein (163aa)
NADH dehydrogenase subunit I (EC:1.6.5.3); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] id=12494882 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
NADH dehydrogenase subunit I (EC:1.6.5.3); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3]
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_3235_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15631..16272
DNA (642bp) protein (214aa)
nuoJ; NADH dehydrogenase I subunit J (EC:1.6.5.3); K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] id=12494883 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
nuoJ; NADH dehydrogenase I subunit J (EC:1.6.5.3); K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3]
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_3235_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16269..16574
DNA (306bp) protein (102aa)
nuoK; NADH dehydrogenase subunit K (EC:1.6.5.3); K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] id=12494884 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
nuoK; NADH dehydrogenase subunit K (EC:1.6.5.3); K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_3235_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16574..16984
DNA (411bp) protein (137aa)
nuoL; NADH dehydrogenase I subunit L (EC:1.6.5.3); K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] id=12494885 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
nuoL; NADH dehydrogenase I subunit L (EC:1.6.5.3); K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying 19 items

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