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SCNPILOT_EXPT_750_P_Legionella_40_6_1

SCNPILOT_EXPT_1000_BF_Legionella_40_6
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Legionella  →  Legionellales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 251-300 of 331 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_2135
Genus: Legionella (68.42%)
19 17630 bp 41.46 5.79 90.44
SCNpilot_expt_1000_bf_scaffold_14922
Genus: Legionella (66.67%)
9 5041 bp 36.10 5.80 62.13
SCNpilot_expt_1000_bf_scaffold_2491
Genus: Legionella (90.91%)
11 11300 bp 41.31 5.80 89.39
SCNpilot_expt_1000_bf_scaffold_7892
Genus: Legionella (55.56%)
9 8700 bp 38.07 5.80 75.90
SCNpilot_expt_1000_bf_scaffold_2816
Genus: Legionella (88.24%)
17 14875 bp 39.54 5.80 93.64
SCNpilot_expt_1000_bf_scaffold_32888
Species: Legionella drancourtii (100%)
1 1379 bp 36.62 5.80 68.53
SCNpilot_expt_1000_bf_scaffold_1354
Species: Legionella drancourtii (52.17%)
23 22908 bp 41.35 5.81 93.31
SCNpilot_expt_1000_bf_scaffold_1371
Class: Gammaproteobacteria (86.36%)
22 20062 bp 36.32 5.82 86.09
SCNpilot_expt_1000_bf_scaffold_2876
Species: Legionella drancourtii (75%)
8 9026 bp 40.46 5.82 94.73
SCNpilot_expt_1000_bf_scaffold_1975
Genus: Legionella (75%)
12 11936 bp 41.25 5.82 93.57
SCNpilot_expt_1000_bf_scaffold_2595
Genus: Legionella (64.29%)
14 15778 bp 40.59 5.83 68.26
SCNpilot_expt_1000_bf_scaffold_7111
Genus: Legionella (100%)
7 5734 bp 39.87 5.84 86.75
SCNpilot_expt_1000_bf_scaffold_4196
Species: Legionella drancourtii (75%)
4 9914 bp 41.20 5.85 99.25
SCNpilot_expt_1000_bf_scaffold_2347
Genus: Legionella (58.33%)
12 18141 bp 39.70 5.86 92.39
SCNpilot_expt_1000_bf_scaffold_3192
Genus: Legionella (66.67%)
15 19447 bp 40.23 5.87 89.72
SCNpilot_expt_1000_bf_scaffold_1348
Species: Legionella drancourtii (54.55%)
22 19951 bp 40.17 5.88 91.48
SCNpilot_expt_1000_bf_scaffold_32202
Species: Staphylococcus caprae (50%)
2 1403 bp 31.08 5.88 97.72
SCNpilot_expt_1000_bf_scaffold_5988
Genus: Legionella (91.67%)
12 15161 bp 38.30 5.89 87.03
SCNpilot_expt_1000_bf_scaffold_21751
Species: Legionella pneumophila (50%)
2 1952 bp 38.06 5.89 87.60
SCNpilot_expt_1000_bf_scaffold_9752
Species: Legionella drancourtii (55.56%)
9 6152 bp 40.21 5.89 94.75
SCNpilot_expt_1000_bf_scaffold_4976
Genus: Legionella (75%)
8 6191 bp 37.54 5.90 75.79
SCNpilot_expt_1000_bf_scaffold_2068
Species: Legionella drancourtii (73.33%)
15 13459 bp 42.14 5.91 89.07
SCNpilot_expt_1000_bf_scaffold_7725
Class: Gammaproteobacteria (50%)
6 6514 bp 41.08 5.91 76.77
SCNpilot_expt_1000_bf_scaffold_4766
Species: Legionella drancourtii (50%)
6 10183 bp 41.78 5.92 76.36
SCNpilot_expt_1000_bf_scaffold_5948
Genus: Legionella (66.67%)
3 5913 bp 40.74 5.92 90.66
SCNpilot_expt_1000_bf_scaffold_4820
Species: Legionella drancourtii (50%)
12 12459 bp 39.77 5.94 86.23
SCNpilot_expt_1000_bf_scaffold_4118 13 15812 bp 40.62 5.94 75.78
SCNpilot_expt_1000_bf_scaffold_1603
Species: Legionella drancourtii (71.43%)
14 14539 bp 38.54 5.95 87.18
SCNpilot_expt_1000_bf_scaffold_12446
Species: Legionella drancourtii (60%)
5 3105 bp 39.36 5.96 82.42
SCNpilot_expt_1000_bf_scaffold_5266
Genus: Legionella (60%)
5 5950 bp 41.06 5.97 91.26
SCNpilot_expt_1000_bf_scaffold_36934
Species: Tatlockia micdadei (75%)
4 1255 bp 37.45 5.98 67.41
SCNpilot_expt_1000_bf_scaffold_5083
Genus: Legionella (57.14%)
7 6095 bp 37.33 5.99 74.37
SCNpilot_expt_1000_bf_scaffold_3085
Domain: Bacteria (55.56%)
18 16620 bp 37.61 6.00 71.25
SCNpilot_expt_1000_bf_scaffold_6162
Phylum: Proteobacteria (50%)
6 5834 bp 35.84 6.00 57.44
SCNpilot_expt_1000_bf_scaffold_1963
Species: Legionella drancourtii (56%)
25 29679 bp 42.30 6.00 91.79
SCNpilot_expt_1000_bf_scaffold_8169
Genus: Legionella (80%)
5 4822 bp 36.79 6.01 67.19
SCNpilot_expt_1000_bf_scaffold_10545
Species: Legionella longbeachae (50%)
6 4025 bp 39.90 6.02 80.50
SCNpilot_expt_1000_bf_scaffold_1825
Genus: Legionella (80%)
10 12585 bp 41.19 6.04 91.25
SCNpilot_expt_1000_bf_scaffold_1318
Species: Legionella drancourtii (55.56%)
27 26116 bp 38.98 6.04 86.87
SCNpilot_expt_1000_bf_scaffold_1715
Order: Legionellales (54.55%)
11 20101 bp 40.67 6.04 88.26
SCNpilot_expt_1000_bf_scaffold_1672
Domain: Bacteria (52.63%)
19 22892 bp 38.41 6.06 86.30
SCNpilot_expt_1000_bf_scaffold_15468
Species: Legionella drancourtii (100%)
3 2600 bp 40.27 6.06 82.04
SCNpilot_expt_1000_bf_scaffold_1401
Domain: Bacteria (85.71%)
14 16797 bp 40.76 6.07 96.25
SCNpilot_expt_1000_bf_scaffold_5855
Domain: Bacteria (84.62%)
13 15824 bp 38.58 6.07 97.12
SCNpilot_expt_1000_bf_scaffold_3825
Class: Gammaproteobacteria (50%)
14 15289 bp 41.42 6.10 76.39
SCNpilot_expt_1000_bf_scaffold_16211
Species: Legionella drancourtii (66.67%)
3 2497 bp 43.77 6.11 83.86
SCNpilot_expt_1000_bf_scaffold_3452
Domain: Bacteria (54.55%)
11 7975 bp 38.42 6.14 94.01
SCNpilot_expt_1000_bf_scaffold_2210
Genus: Legionella (69.23%)
13 23693 bp 37.65 6.18 88.05
SCNpilot_expt_1000_bf_scaffold_4030
Species: Legionella drancourtii (100%)
8 7603 bp 39.80 6.18 91.46
SCNpilot_expt_1000_bf_scaffold_5251
Species: Legionella longbeachae (50%)
4 5964 bp 41.99 6.20 96.48
Displaying items 251-300 of 331 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.