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SCNpilot_expt_1000_bf_scaffold_2960

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2960_1
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..515
DNA (513bp) protein (171aa)
Peptide/nickel transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HEY4_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig182, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46300.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
binding-protein-dependent transporter inner membrane component; K02034 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2960_2
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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505..2112
DNA (1608bp) protein (536aa)
AMP-dependent synthetase and ligase; K02182 crotonobetaine/carnitine-CoA ligase [EC:6.2.1.-]
dicarboxylate-CoA ligase PimA n=1 Tax=Rhodococcus opacus RepID=UPI00029CB332 rbh
Plasmid 9, complete sequence {ECO:0000313|EMBL:AHK36177.1}; TaxID=543736 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus PD630.;"
SCNpilot_expt_1000_bf_scaffold_2960_3
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2170..2901)
DNA (732bp) protein (244aa)
GntR family transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MD37_9RHIZ rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:EKF18645.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
GntR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_2960_4
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3050..4621
DNA (1572bp) protein (524aa)
Extracellular solute-binding protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LLM9_9RHIZ rbh
Extracellular solute-binding protein {ECO:0000313|EMBL:EKF18644.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
extracellular solute-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2960_5
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4736..5683
DNA (948bp) protein (316aa)
ABC di/oligopeptide transporter, inner membrane subunit n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N381_9RHIZ rbh
ABC di/oligopeptide transporter, inner membrane subunit {ECO:0000313|EMBL:EKF18643.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ABC di/oligopeptide transporter, inner membrane subunit rbh
SCNpilot_expt_1000_bf_scaffold_2960_6
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5673..6584
DNA (912bp) protein (304aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MN32_9RHIZ rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EKF18642.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2960_7
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6627..7826)
DNA (1200bp) protein (400aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Rhodobacter sphaeroides WS8N RepID=F3U4D9_RHOSH rbh
mandelate racemase/muconate lactonizing protein rbh
Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence {ECO:0000313|EMBL:ABA81742.1}; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
SCNpilot_expt_1000_bf_scaffold_2960_8
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7939..8913
DNA (975bp) protein (325aa)
Succinylglutamate desuccinylase/aspartoacylase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MN31_9RHIZ
Succinylglutamate desuccinylase/aspartoacylase {ECO:0000313|EMBL:EKF18637.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
succinylglutamatedesuccinylase/aspartoacylase; K06987
SCNpilot_expt_1000_bf_scaffold_2960_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8996..10486
DNA (1491bp) protein (497aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000379633B
Microcystinase C {ECO:0000256|PIRNR:PIRNR012702}; Short=MlrC {ECO:0000256|PIRNR:PIRNR012702};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
MlrC domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_2960_10
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10506..11315
DNA (810bp) protein (270aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MD31_9RHIZ
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:EKF18635.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
mandelate racemase/muconate lactonizing family protein
Displaying 10 items

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