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SCNpilot_expt_1000_bf_scaffold_1172

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1172_1
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..753)
DNA (753bp) protein (251aa)
Peptide/nickel transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GZW3_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig182, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46301.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
putative oligopeptide ABC transporter (permease)
SCNpilot_expt_1000_bf_scaffold_1172_2
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(759..1772)
DNA (1014bp) protein (338aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q301_9FIRM
Oligopeptide/dipeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EKP95623.1}; TaxID=867903 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
ykfD; oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein
SCNpilot_expt_1000_bf_scaffold_1172_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1769..2776)
DNA (1008bp) protein (336aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VKF3_RHOPX rbh
oligopeptide/dipeptide ABC transporter ATPase rbh
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ADU45632.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_expt_1000_bf_scaffold_1172_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2867..4372)
DNA (1506bp) protein (502aa)
Extracellular solute-binding protein family 5 n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VKF1_RHOPX rbh
Uncharacterized protein {ECO:0000313|EMBL:KGM36073.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1172_5
Streptomyces auratus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4518..5246)
DNA (729bp) protein (243aa)
TetR family transcriptional regulator n=1 Tax=Streptomyces auratus AGR0001 RepID=J1S8V3_9ACTO
TetR family transcriptional regulator {ECO:0000313|EMBL:EJJ07272.1}; TaxID=1160718 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces auratus AGR0001.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1172_6
unknown

Not on your lists

comp(5497..5670)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1172_7
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6108..6620
DNA (513bp) protein (171aa)
Peroxisomal trans-2-enoyl-CoA reductase {ECO:0000313|EMBL:CDX42615.1}; EC=1.3.1.38 {ECO:0000313|EMBL:CDX42615.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
Uncharacterized protein n=1 Tax=Psychrobacter sp. G RepID=S4YYV6_9GAMM
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_1172_8
unknown

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6617..6736
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1172_9
unknown

Not on your lists

6767..7300
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1172_10
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7212..8651)
DNA (1440bp) protein (480aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2PIB8_9ACTO rbh
Uncharacterized protein {ECO:0000313|EMBL:ETK37660.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
FAD-binding monooxygenase
SCNpilot_expt_1000_bf_scaffold_1172_11
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8740..9213
DNA (474bp) protein (158aa)
Transcriptional regulator, MarR family n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T7D6_CAUSK
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABZ69674.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_1172_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9288..10223)
DNA (936bp) protein (312aa)
dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
Dihydrodipicolinate synthetase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I3I9_9RHIZ rbh
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:EHK52443.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_1172_13
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10238..11674)
DNA (1437bp) protein (479aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
aldehyde dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031DD017
Aldehyde dehydrogenase {ECO:0000313|EMBL:KGM34921.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_expt_1000_bf_scaffold_1172_14
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11676..12011)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031D55C6
Ferredoxin {ECO:0000313|EMBL:KGM31877.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
putative ferredoxin; K05524 ferredoxin
SCNpilot_expt_1000_bf_scaffold_1172_15
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12022..12801)
DNA (780bp) protein (260aa)
enoyl-CoA hydratase/isomerase; K08299 carnitinyl-CoA dehydratase [EC:4.2.1.-]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E6DC4E rbh
Crotonase {ECO:0000313|EMBL:KGM31876.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_expt_1000_bf_scaffold_1172_16
unknown

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comp(12798..12953)
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1172_17
unknown

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13209..13463
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1172_18
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13999..15351)
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031A2EF3 rbh
Invasion protein {ECO:0000313|EMBL:KGM31874.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1172_19
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15390..16232)
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EB8576 rbh
ABC transporter permease {ECO:0000313|EMBL:KGM31873.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ABC transporter, permease protein
SCNpilot_expt_1000_bf_scaffold_1172_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16232..17053)
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E93E8C rbh
ABC transporter, ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGU50601.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_1000_bf_scaffold_1172_21
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17067..18101)
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000304F46F rbh
Nitrate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KAK48800.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
twin-arginine translocation pathway signal
SCNpilot_expt_1000_bf_scaffold_1172_22
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18306..19280
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036845C5 rbh
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABM59221.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_1172_23
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19808..20932)
DNA (1125bp) protein (375aa)
L-rhamnonate dehydratase (EC:4.2.1.90)
Paral putative galactonate dehydratase n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGS7_9RHOB rbh
Paral putative galactonate dehydratase {ECO:0000313|EMBL:EAR51858.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
SCNpilot_expt_1000_bf_scaffold_1172_24
Burkholderia sp. CCGE1003, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21146..22144)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00036C2008
LacI family transcriptional regulator; K06145 LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ADN61835.1}; TaxID=640512 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1003).;"
SCNpilot_expt_1000_bf_scaffold_1172_25
unknown

Not on your lists

22282..22596
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1172_26
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22606..23370
DNA (765bp) protein (255aa)
ABC transporter related protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JJ38_9RHIZ
ABC transporter related protein {ECO:0000313|EMBL:EGL62120.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1172_27
Planktomarina temperata, Planktomarina, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23636..24394
DNA (759bp) protein (253aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UE94_SINMW
ABC transporter, permease protein {ECO:0000313|EMBL:AII86207.1}; TaxID=666509 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Planktomarina.;" source="Planktomarina temperata RCA23.;"
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1172_28
Planktomarina temperata, Planktomarina, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24384..25187
DNA (804bp) protein (268aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UE95_SINMW
ABC transporter, permease protein {ECO:0000313|EMBL:AII86206.1}; TaxID=666509 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Planktomarina.;" source="Planktomarina temperata RCA23.;"
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1172_29
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25188..26243
DNA (1056bp) protein (352aa)
Putative oxidoreductase n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGT2_9RHOB
Putative oxidoreductase {ECO:0000313|EMBL:EAR51853.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
oxidoreductase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1172_30
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26291..27022
DNA (732bp) protein (244aa)
3-hydroxybutyrate dehydrogenase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZN03_9PROT
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:EKN00681.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
oxidoreductase
Displaying items 1-30 of 35 in total

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