ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1307

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1307_1
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..745)
DNA (744bp) protein (248aa)
Putative branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Rhizobium sp. RepID=L0NKV6_RHISP
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEQ10423.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
ABC transporter related; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1307_2
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(738..1712)
DNA (975bp) protein (325aa)
ABC-type branched-chain amino acid transport system, permease component n=1 Tax=Rhizobium sp. CF080 RepID=J2S675_9RHIZ rbh
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EUC00804.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
branched-chain amino acid transport system permease rbh
SCNpilot_expt_1000_bf_scaffold_1307_3
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1716..2636)
DNA (921bp) protein (307aa)
High-affinity branched-chain amino acid transport system permease protein LivH (LIV-I protein H) n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MP78_9RHIZ rbh
Inner-membrane translocator {ECO:0000313|EMBL:CDN50360.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
branched-chain amino acid transport system permease rbh
SCNpilot_expt_1000_bf_scaffold_1307_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2833..3537)
DNA (705bp) protein (235aa)
ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000376AF41
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EYR78728.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter substrate binding protei; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1307_5
unknown

Not on your lists

3677..3961
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1307_6
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4167..5795)
DNA (1629bp) protein (543aa)
Acid-CoA ligase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BQI7_9RHIZ rbh
2-aminobenzoate-CoA ligase {ECO:0000313|EMBL:EXL10352.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
acyl-CoA synthetase/AMP-acid ligase
SCNpilot_expt_1000_bf_scaffold_1307_7
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5792..6955)
DNA (1164bp) protein (388aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EUK9_9RHIZ
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:CCV03356.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
acyl-CoA dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1307_8
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6955..7773)
DNA (819bp) protein (273aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:EKF19093.1}; EC=4.2.1.17 {ECO:0000313|EMBL:EKF19093.1};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Enoyl-CoA hydratase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N4G5_9RHIZ rbh
enoyl-CoA hydratase/carnithine racemase
SCNpilot_expt_1000_bf_scaffold_1307_9
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7770..8246)
DNA (477bp) protein (159aa)
Regulatory protein MarR n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TMX5_MESCW
MarR family transcriptional regulator
Regulatory protein MarR {ECO:0000313|EMBL:ADV09280.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_1307_10
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8246..8995)
DNA (750bp) protein (250aa)
Granaticin polyketide ketoreductase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BQI3_9RHIZ rbh
Granaticin polyketide ketoreductase {ECO:0000313|EMBL:EIM71835.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_1307_11
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8995..11286)
DNA (2292bp) protein (764aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BQI2_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM71834.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
NADH:flavin oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_1307_12
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11481..11717
DNA (237bp) protein (79aa)
Transcriptional regulator protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0WBZ1_9RHIZ
Transcriptional regulator protein {ECO:0000313|EMBL:EJZ20954.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_1307_13
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11804..12631)
DNA (828bp) protein (276aa)
oxidoreductase FAD/NAD(P)-binding protein; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2] rbh
Oxidoreductase FAD/NAD(P)-binding protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PLN4_9RHIZ rbh
Oxidoreductase FAD/NAD(P)-binding protein {ECO:0000313|EMBL:EKF42017.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_1307_14
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12868..14904
DNA (2037bp) protein (679aa)
N-methylhydantoinase A; K01473 N-methylhydantoinase A [EC:3.5.2.14]
5-oxoprolinase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJ52_9RHIZ
5-oxoprolinase {ECO:0000313|EMBL:EHK59244.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_1307_15
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14901..16649
DNA (1749bp) protein (583aa)
5-oxoprolinase (EC:3.5.2.9); K01474 N-methylhydantoinase B [EC:3.5.2.14]
N-methylhydantoinase B n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M8C6_9RHIZ rbh
N-methylhydantoinase B {ECO:0000313|EMBL:EKF17185.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_1307_16
Lyngbya confervoides, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(16698..17099)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11JV2_MESSB
Curlin {ECO:0000313|EMBL:KIF44142.1}; TaxID=1574623 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya confervoides BDU141951.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1307_17
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17280..17660)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11JV3_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG62322.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_1307_18
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17742..18176)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCK8_PELHB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ50680.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_1307_19
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18322..18774)
DNA (453bp) protein (151aa)
Transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJ97_9RHIZ
HTH-type transcriptional repressor NicR {ECO:0000313|EMBL:CDX27049.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1307_20
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18771..19355)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MKP7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF17817.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1307_21
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19601..19873
DNA (273bp) protein (91aa)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
SCNpilot_expt_1000_bf_scaffold_1307_22
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19862..21733)
DNA (1872bp) protein (624aa)
6-hydroxynicotinate reductase n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7GWB9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX38703.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1307_23
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21730..24684)
DNA (2955bp) protein (985aa)
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YAB5_9RHIZ
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein {ECO:0000313|EMBL:EHH11428.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
SCNpilot_expt_1000_bf_scaffold_1307_24
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24681..25553)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003750F9B rbh
Monoxide dehydrogenase {ECO:0000313|EMBL:CDX53787.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
monoxide dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1307_25
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25699..26298
DNA (600bp) protein (200aa)
isochorismatase hydrolase; K08281 nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] rbh
Isochorismatase hydrolase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MKQ3_9RHIZ rbh
Isochorismatase hydrolase {ECO:0000313|EMBL:EKF17822.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_1307_26
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26439..26801)
DNA (363bp) protein (121aa)
5-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; EC=2.3.1.37 {ECO:0000256|RuleBase:RU910713};; 5-aminolevulinic acid synthase {ECO:0000256|RuleBase:RU910713}; Delta-ALA synthase {ECO:0000256|RuleBase:RU910713}; Delta-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
hemA; 5-aminolevulinate synthase (EC:2.3.1.37); K00643 5-aminolevulinate synthase [EC:2.3.1.37]
5-aminolevulinate synthase n=1 Tax=Amorphus coralli RepID=UPI00037CF78A
Displaying 26 items

View Taxonomy