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SCNpilot_expt_1000_bf_scaffold_1623

Search features with annotation key words

Displaying items 1-30 of 145 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1623_1
unknown

Not on your lists

comp(3..170)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1623_2
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(230..1033)
DNA (804bp) protein (268aa)
Nitrate transporter protein-like protein, (NrtC), (CmpC) n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VFY7_9RHOB rbh
Nitrate transporter protein-like protein, (NrtC), (CmpC) {ECO:0000313|EMBL:EAQ12763.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1623_3
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1035..1616)
DNA (582bp) protein (194aa)
ABC transporter, permease protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VFY6_9RHOB
ABC transporter, permease protein {ECO:0000313|EMBL:EAQ12762.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_1623_4
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1802..2566)
DNA (765bp) protein (255aa)
Putative ABC transporter membrane protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VFY5_9RHOB
Putative ABC transporter membrane protein {ECO:0000313|EMBL:EAQ12761.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
ABC transporter; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1623_5
unknown

Not on your lists

2984..3091
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1623_6
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3096..3704)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VFY4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ12760.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
hypothetical protein; K07118
SCNpilot_expt_1000_bf_scaffold_1623_7
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3941..4861
DNA (921bp) protein (307aa)
Nodulation protein d1 n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9R5Z8_9DELT
Nodulation protein d1 {ECO:0000313|EMBL:EPX64413.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1623_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4898..5608
DNA (711bp) protein (237aa)
Transcliptional regulator TetR family n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ99_AGRRK
TetR family transcriptional regulator
Transcliptional regulator TetR family {ECO:0000313|EMBL:ACM31318.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1623_9
unknown

Not on your lists

comp(5741..5962)
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1623_10
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6008..6433
DNA (426bp) protein (142aa)
Short-chain alcohol dehydrogenase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ98_AGRRK
short-chain alcohol dehydrogenase
Short-chain alcohol dehydrogenase {ECO:0000313|EMBL:ACM31317.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1623_11
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6440..6745)
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI0003761581
Uncharacterized protein {ECO:0000313|EMBL:CCE07209.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein; K07145
SCNpilot_expt_1000_bf_scaffold_1623_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6772..7563)
DNA (792bp) protein (264aa)
Short-chain alcohol dehydrogenase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ97_AGRRK rbh
short-chain alcohol dehydrogenase rbh
Short-chain alcohol dehydrogenase {ECO:0000313|EMBL:ACM31316.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1623_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7573..8061)
DNA (489bp) protein (163aa)
Short-chain alcohol dehydrogenase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ96_AGRRK
short-chain alcohol dehydrogenase
Short-chain alcohol dehydrogenase {ECO:0000313|EMBL:ACM31315.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1623_14
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8379..9380)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VFY3_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:EAQ12759.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
slr0619; hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1623_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9505..9984)
DNA (480bp) protein (160aa)
Transcriptional regulatory protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ93_AGRRK
transcriptional regulatory protein
Transcriptional regulatory protein {ECO:0000313|EMBL:ACM31312.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1623_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10036..10515)
DNA (480bp) protein (160aa)
Lactoylglutathione lyase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ92_AGRRK
Lactoylglutathione lyase
Lactoylglutathione lyase {ECO:0000313|EMBL:ACM31311.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1623_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10519..11475)
DNA (957bp) protein (319aa)
Fumarylacetoacetate hydrolase family protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ91_AGRRK rbh
fumarylacetoacetate hydrolase family protein rbh
Fumarylacetoacetate hydrolase family protein {ECO:0000313|EMBL:ACM31310.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1623_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11488..12561)
DNA (1074bp) protein (358aa)
histidinol dehydrogenase; K15509 sulfopropanediol 3-dehydrogenase [EC:1.1.1.308] rbh
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
Histidinol dehydrogenase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ90_AGRRK rbh
SCNpilot_expt_1000_bf_scaffold_1623_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12827..13597)
DNA (771bp) protein (257aa)
Short-chain alcohol dehydrogenase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ89_AGRRK rbh
short-chain alcohol dehydrogenase rbh
Short-chain alcohol dehydrogenase {ECO:0000313|EMBL:ACM31308.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1623_20
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13792..14400)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VAN8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ14979.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1623_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14397..15374)
DNA (978bp) protein (326aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ87_AGRRK rbh
Nucleoside-diphosphate-sugar epimerase rbh
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:ACM31306.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1623_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15502..16065)
DNA (564bp) protein (188aa)
Reductase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ79_AGRRK
reductase
Reductase {ECO:0000313|EMBL:ACM31298.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1623_23
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16293..17876
DNA (1584bp) protein (528aa)
Phytoene dehydrogenase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ85_AGRRK rbh
Phytoene dehydrogenase rbh
Phytoene dehydrogenase {ECO:0000313|EMBL:ACM31304.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1623_24
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17798..18694)
DNA (897bp) protein (299aa)
Hypothetical conserved protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3Q1P5_RHIE6
hypothetical protein
Hypothetical conserved protein {ECO:0000313|EMBL:ACE93601.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_1623_25
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18730..19017)
DNA (288bp) protein (96aa)
hypothetical protein; K04100 protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ83_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:ACM31302.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1623_26
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19014..19892)
DNA (879bp) protein (293aa)
2,3-dihydroxybiphenyl 1,2-dioxygenase; K04101 protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8] rbh
2, 3-dihydroxybiphenyl 1, 2-dioxygenase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ82_AGRRK rbh
2, 3-dihydroxybiphenyl 1, 2-dioxygenase {ECO:0000313|EMBL:ACM31301.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1623_27
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19897..20550)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQ81_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM31300.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1623_28
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20660..21820)
DNA (1161bp) protein (387aa)
Putative hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7B6_PELHB rbh
Hydrolase {ECO:0000313|EMBL:KGM47167.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II-S11g.;"
putative hydrolases or acyltransferases (alpha/beta hydrolase superfamily) rbh
SCNpilot_expt_1000_bf_scaffold_1623_29
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21868..22986)
DNA (1119bp) protein (373aa)
2-polyprenyl-6-methoxyphenol hydroxylase-related FAD-dependent oxidoreductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7B5_PELHB rbh
2-polyprenyl-6-methoxyphenol 4-hydroxylase rbh
2-polyprenyl-6-methoxyphenol hydroxylase-related FAD-dependent oxidoreductase {ECO:0000313|EMBL:AEQ51251.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_1623_30
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23058..23990)
DNA (933bp) protein (311aa)
Putative transcriptional regulatory protein, LysR family n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T4P9_9BRAD rbh
Nodulation protein NfeD {ECO:0000313|EMBL:KGM47165.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II-S11g.;"
putative transcriptional regulatory protein, LysR family rbh
Displaying items 1-30 of 145 in total

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