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SCNpilot_expt_1000_bf_scaffold_1711

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Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1711_1
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1064
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036DF458
Putative monovalent cation/H+ antiporter subunit D {ECO:0000313|EMBL:EGL64298.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
phaD; monovalent cation/H+ antiporter subunit D; K05561 multicomponent K+:H+ antiporter subunit D
SCNpilot_expt_1000_bf_scaffold_1711_2
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1061..1543
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037A8449
Cation:proton antiporter {ECO:0000313|EMBL:ETR77580.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
phaE; multisubunit K+/H+ antiporter subunit E
SCNpilot_expt_1000_bf_scaffold_1711_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1540..1824
DNA (285bp) protein (95aa)
cation:proton antiporter n=1 Tax=Hoeflea sp. 108 RepID=UPI0003795813
multiple resistance and pH regulation protein F; K05563 multicomponent K+:H+ antiporter subunit F
Multiple resistance and pH regulation protein F {ECO:0000313|EMBL:ADU44297.1}; Flags: Precursor;; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_expt_1000_bf_scaffold_1711_4
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1821..2222
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000363D4DF
Cation:proton antiporter {ECO:0000313|EMBL:ETR77578.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
phaG; ph adaptation potassium efflux system protein G
SCNpilot_expt_1000_bf_scaffold_1711_5
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(2253..3182)
DNA (930bp) protein (310aa)
Putative ABC-type transport system, permease component n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XXD3_9FIRM
inner-membrane translocator; K02057 simple sugar transport system permease protein
Tax=RBG_13_Chloroflexi_66_10_curated
SCNpilot_expt_1000_bf_scaffold_1711_6
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3175..4197)
DNA (1023bp) protein (341aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3ADE9_9CLOT
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EFD00127.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
ABC transporter permease; K02057 simple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1711_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4194..5765)
DNA (1572bp) protein (524aa)
nucleoside ABC transporter ATP-binding protein (EC:3.6.3.17); K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] id=24600349 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
Tax=RBG_16_RIF_WS3X_71_46_curated
SCNpilot_expt_1000_bf_scaffold_1711_8
Paenibacillus sp. TCA20, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5772..6728)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F71BF3 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAK41433.1}; TaxID=1499968 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. TCA20.;"
hypothetical protein; K07335 basic membrane protein A and related proteins
SCNpilot_expt_1000_bf_scaffold_1711_9
Tateyamaria sp. ANG-S1, Tateyamaria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6774..7439)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036C5C73
Isochorismatase {ECO:0000313|EMBL:KIC48650.1}; TaxID=1577905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Tateyamaria.;" source="Tateyamaria sp. ANG-S1.;"
isochorismatase hydrolase
SCNpilot_expt_1000_bf_scaffold_1711_10
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7459..8061)
DNA (603bp) protein (201aa)
Helix-turn-helix transcriptional regulator with cupin domain n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A4K4_PELCD
transcriptional regulator
Helix-turn-helix transcriptional regulator with cupin domain {ECO:0000313|EMBL:ABA88703.1}; TaxID=338963 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1).;"
SCNpilot_expt_1000_bf_scaffold_1711_11
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8068..8358)
DNA (291bp) protein (97aa)
Uncharacterized protein n=2 Tax=Sphingomonas wittichii RepID=A5V7Y0_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ68396.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_1711_12
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8358..10160)
DNA (1803bp) protein (601aa)
hydantoinase B/oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] rbh
Hydantoinase B/oxoprolinase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V7X9_SPHWW rbh
Hydantoinase B/oxoprolinase {ECO:0000313|EMBL:ABQ68395.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_1711_13
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10164..12278)
DNA (2115bp) protein (705aa)
5-oxoprolinase (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14] rbh
5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:ABQ68394.1}; EC=3.5.2.9 {ECO:0000313|EMBL:ABQ68394.1};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002EECC9F rbh
SCNpilot_expt_1000_bf_scaffold_1711_14
Amycolatopsis sp. MJM2582, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12334..12882)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00035F7BCB
XRE family transcriptional regulator {ECO:0000313|EMBL:KFZ78072.1}; TaxID=1427749 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis sp. MJM2582.;"
Transcriptional regulatory protein
SCNpilot_expt_1000_bf_scaffold_1711_15
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13083..14210)
DNA (1128bp) protein (376aa)
aspartate transaminase; K00812 aspartate aminotransferase [EC:2.6.1.1] rbh
Aspartate transaminase {ECO:0000313|EMBL:AEA28126.1}; EC=2.6.1.1 {ECO:0000313|EMBL:AEA28126.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Aspartate transaminase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CK20_PSEUX rbh
SCNpilot_expt_1000_bf_scaffold_1711_16
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14252..14767)
DNA (516bp) protein (172aa)
Bacterial regulatory helix-turn-helix protein, MarR family protein 19 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HXI3_ACHXA
MarR family transcriptional regulator
Bacterial regulatory helix-turn-helix protein, MarR family protein 19 {ECO:0000313|EMBL:ADP18836.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_expt_1000_bf_scaffold_1711_17
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14814..15635)
DNA (822bp) protein (274aa)
ABC transporter; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21] rbh
ABC transporter related n=1 Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6W7C1_KINRD rbh
ABC transporter related {ECO:0000313|EMBL:ABS02710.1}; TaxID=266940 species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
SCNpilot_expt_1000_bf_scaffold_1711_18
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15632..16582)
DNA (951bp) protein (317aa)
Amino acid ABC transporter membrane protein (Fragment) n=1 Tax=Arthrobacter crystallopoietes BAB-32 RepID=N1UZE1_9MICC
Polar amino acid transporter permease {ECO:0000313|EMBL:EWM14971.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
amino acid ABC transporter membrane protein; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1711_19
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16579..17091)
DNA (513bp) protein (171aa)
hcrC; 4-hydroxybenzoyl-CoA reductase, 2Fe-2S iron-sulfur cluster subunit C (EC:1.3.7.9); K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
Uncharacterized protein n=1 Tax=Streptomyces sp. HGB0020 RepID=S2Z5F9_9ACTO
Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT {ECO:0000313|EMBL:AIY15886.1}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
SCNpilot_expt_1000_bf_scaffold_1711_20
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17088..17792)
DNA (705bp) protein (235aa)
Xanthine dehydrogenase, molybdenum binding subunit {ECO:0000313|EMBL:AIY15887.1}; EC=1.17.1.4 {ECO:0000313|EMBL:AIY15887.1};; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI000368E393
coxM; putative aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein
SCNpilot_expt_1000_bf_scaffold_1711_21
Streptomyces sp. HGB0020, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17768..20410)
DNA (2643bp) protein (881aa)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI000368E393 rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD69479.1}; TaxID=1078086 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HGB0020.;"
xanthine dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1711_22
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20498..21442)
DNA (945bp) protein (315aa)
ABC transport system substrate-binding protein n=3 Tax=Amycolatopsis mediterranei RepID=D8HLC7_AMYMU
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AEK47911.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
SCNpilot_expt_1000_bf_scaffold_1711_23
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21758..22393)
DNA (636bp) protein (212aa)
Cupin n=1 Tax=Burkholderia terrae BS001 RepID=I5CX84_9BURK
Cupin {ECO:0000313|EMBL:EIN00503.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1711_24
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22405..23019)
DNA (615bp) protein (205aa)
transcriptional regulator n=1 Tax=Rhizobium gallicum RepID=UPI00037C075B
Putative transcriptional regulator {ECO:0000313|EMBL:EJB06414.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1711_25
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23045..23875)
DNA (831bp) protein (277aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A146_STAND
binding-protein-dependent transporters inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADH87556.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_1711_26
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23866..24603)
DNA (738bp) protein (246aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A147_STAND
binding-protein-dependent transporters inner membrane component; K02050 NitT/TauT family transport system permease protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_1000_bf_scaffold_1711_27
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24603..25424)
DNA (822bp) protein (274aa)
ABC transporter related protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A148_STAND
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_1000_bf_scaffold_1711_28
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25542..26564)
DNA (1023bp) protein (341aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T2T8_BURPP
Uncharacterized protein {ECO:0000313|EMBL:AJP48564.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
SCNpilot_expt_1000_bf_scaffold_1711_29
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26657..27256)
DNA (600bp) protein (200aa)
Putative decarboxylase n=7 Tax=Bordetella RepID=K0N0K9_BORBM
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
SCNpilot_expt_1000_bf_scaffold_1711_30
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(27253..27765)
DNA (513bp) protein (171aa)
comD; sulfopyruvate decarboxylase subunit alpha (EC:4.1.1.79); K06034 sulfopyruvate decarboxylase subunit alpha [EC:4.1.1.79]
Sulfopyruvate decarboxylase subunit alpha n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4C0D1_METCG
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
Displaying items 1-30 of 68 in total

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