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SCNpilot_expt_1000_bf_scaffold_1907

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1907_1
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..188
DNA (186bp) protein (62aa)
Uronate isomerase {ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|SAAS:SAAS00013438};; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalianensis.;"
uronate isomerase; K01812 glucuronate isomerase [EC:5.3.1.12]
Uronate isomerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBE4_PELHB
SCNpilot_expt_1000_bf_scaffold_1907_2
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(193..1131)
DNA (939bp) protein (313aa)
Auxin Efflux Carrier n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TAA9_9RHIZ
Auxin Efflux Carrier {ECO:0000313|EMBL:ESR23383.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
permease; K07088
SCNpilot_expt_1000_bf_scaffold_1907_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1355..2548
DNA (1194bp) protein (398aa)
Branched-chain amino acid ABC transporter periplasmic protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HT68_9RHIZ rbh
Branched-chain amino acid ABC transporter periplasmic protein {ECO:0000313|EMBL:EHK56067.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1907_4
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2679..3542
DNA (864bp) protein (288aa)
Branched-chain amino acid ABC transport system permease n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HT67_9RHIZ rbh
Branched-chain amino acid ABC transport system permease {ECO:0000313|EMBL:EHK56066.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
branched-chain amino acid ABC transport system permease; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1907_5
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3546..4535
DNA (990bp) protein (330aa)
Inner-membrane translocator (Fragment) n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HT65_9RHIZ rbh
branched-chain amino acid ABC transport system permease; K01998 branched-chain amino acid transport system permease protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_expt_1000_bf_scaffold_1907_6
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4532..5290
DNA (759bp) protein (253aa)
livG; leucine/isoleucine/valine transporter subunit ; ATP-binding component of ABC superfamily (EC:3.6.3.31)
Branched-chain amino acid ABC transporter ATP-binding protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HT64_9RHIZ rbh
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:EHK56110.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_1907_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5274..6008
DNA (735bp) protein (245aa)
ABC transporter-like protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HT63_9RHIZ rbh
ABC transporter-like protein {ECO:0000313|EMBL:EHK56109.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
high-affinity branched-chain amino acid transport ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1907_8
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6070..6804
DNA (735bp) protein (245aa)
Transcriptional regulator n=2 Tax=Rhizobium RepID=J2L292_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:EJJ27592.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
GntR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1907_9
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6931..8343
DNA (1413bp) protein (471aa)
Glycine cleavage system T protein, aminomethyltransferase n=1 Tax=Rhizobium sp. RepID=L0NF71_RHISP rbh
Glycine cleavage system T protein, aminomethyltransferase {ECO:0000313|EMBL:CCF19728.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
gcvT; glycine cleavage system T protein, aminomethyltransferase; K15066 vanillate/3-O-methylgallate O-demethylase rbh
SCNpilot_expt_1000_bf_scaffold_1907_10
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8511..8915
DNA (405bp) protein (135aa)
Endoribonuclease L-PSP n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X5R8_OCHA4
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:ABS16572.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_1907_11
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8925..9755)
DNA (831bp) protein (277aa)
FolD bifunctional protein n=1 Tax=Ketogulonicigenium vulgare (strain Y25) RepID=E3F2J9_KETVY
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
FolD bifunctional protein
SCNpilot_expt_1000_bf_scaffold_1907_12
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9761..10546)
DNA (786bp) protein (262aa)
Putative transcriptional regulator, IclR family; putative Pca regulon regulatory protein n=1 Tax=Ketogulonicigenium vulgare (strain Y25) RepID=E3F2J7_KETVY
Transcriptional regulator, IclR family {ECO:0000313|EMBL:KFC67393.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
IclR family transcriptional regulator; K02624 IclR family transcriptional regulator, pca regulon regulatory protein
SCNpilot_expt_1000_bf_scaffold_1907_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10654..12192)
DNA (1539bp) protein (513aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14]
5-oxoprolinase n=1 Tax=Oceanicola sp. S124 RepID=UPI0002558CF3 rbh
5-oxoprolinase {ECO:0000313|EMBL:KAJ32574.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_1907_14
Meyerozyma guilliermondii, Meyerozyma, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

13119..13697
DNA (579bp) protein (193aa)
hypothetical protein PGUG_01202 n=1 Tax=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) RepID=UPI000151ABA9
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EDK37104.2}; TaxID=294746 species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Meyerozyma.;" source="Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM; 1539 / NBRC 10279 / NRRL Y-324) (Yeast) (Candida guilliermondii).;"
SCNpilot_expt_1000_bf_scaffold_1907_15
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13996..14493)
DNA (498bp) protein (166aa)
allA; ureidoglycolate hydrolase; K01483 ureidoglycolate hydrolase [EC:3.5.3.19]
Ureidoglycolate lyase {ECO:0000256|SAAS:SAAS00181913}; EC=4.3.2.3 {ECO:0000256|SAAS:SAAS00181913};; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
ureidoglycolate hydrolase n=1 Tax=Oceanicola sp. S124 RepID=UPI0002558CF1
SCNpilot_expt_1000_bf_scaffold_1907_16
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14648..15442
DNA (795bp) protein (265aa)
Creatininase subfamily protein (EC:3.5.2.10); K01470 creatinine amidohydrolase [EC:3.5.2.10] rbh
Creatininase subfamily n=2 Tax=Ketogulonicigenium vulgare RepID=E3F1X0_KETVY rbh
Creatininase subfamily {ECO:0000313|EMBL:ADO43169.1}; TaxID=880591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain Y25).;"
SCNpilot_expt_1000_bf_scaffold_1907_17
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15439..16743
DNA (1305bp) protein (435aa)
codAch2; amidohydrolase (EC:3.5.4.1) rbh
Cytosine deaminase n=2 Tax=Ketogulonicigenium vulgare RepID=E3F2J0_KETVY rbh
Cytosine deaminase {ECO:0000313|EMBL:ADO43170.1}; TaxID=880591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain Y25).;"
SCNpilot_expt_1000_bf_scaffold_1907_18
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16740..18131
DNA (1392bp) protein (464aa)
FAD linked oxidase protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F2J1_KETVY rbh
FAD linked oxidase protein rbh
FAD linked oxidase protein {ECO:0000313|EMBL:AEM41470.1}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
SCNpilot_expt_1000_bf_scaffold_1907_19
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18142..18723
DNA (582bp) protein (194aa)
NAD(P)H dehydrogenase protein n=2 Tax=Ketogulonicigenium vulgare RepID=F9YA60_KETVW
Azoreductase {ECO:0000313|EMBL:KFC67392.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
NAD(P)H dehydrogenase protein
SCNpilot_expt_1000_bf_scaffold_1907_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

18747..20009
DNA (1263bp) protein (421aa)
FAD dependent oxidoreductase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1] rbh
FAD dependent oxidoreductase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MSL6_9BURK rbh
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
SCNpilot_expt_1000_bf_scaffold_1907_21
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20050..20856
DNA (807bp) protein (269aa)
ABC transporter related protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F2J3_KETVY rbh
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein rbh
ABC transporter related protein {ECO:0000313|EMBL:ADO43173.1}; TaxID=880591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain Y25).;"
SCNpilot_expt_1000_bf_scaffold_1907_22
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20865..21722
DNA (858bp) protein (286aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9YA62_KETVW rbh
Putative aliphatic sulfonates transport permease protein ssuC {ECO:0000313|EMBL:KFC67390.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
nitrate/sulfonate/bicarbonate ABC transporter permease; K02050 NitT/TauT family transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1907_23
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21781..22413
DNA (633bp) protein (211aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=F9YA63_KETVW
Uncharacterized protein {ECO:0000313|EMBL:KFC67389.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1907_24
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22376..22945
DNA (570bp) protein (190aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=F9YA63_KETVW
Uncharacterized protein {ECO:0000313|EMBL:KFC67389.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1907_25
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

23001..23897
DNA (897bp) protein (299aa)
Amidohydrolase family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JJ95_9BACT
Amidohydrolase family {ECO:0000313|EMBL:EDY83247.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
amidohydrolase 2
SCNpilot_expt_1000_bf_scaffold_1907_26
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24024..24662
DNA (639bp) protein (213aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=F9YA63_KETVW
Uncharacterized protein {ECO:0000313|EMBL:KFC67389.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1907_27
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24625..25209
DNA (585bp) protein (195aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=F9YA63_KETVW
Uncharacterized protein {ECO:0000313|EMBL:KFC67389.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1907_28
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25216..26070
DNA (855bp) protein (285aa)
methylenetetrahydrofolate dehydrogenase; K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] rbh
Bifunctional protein FolD n=1 Tax=Ketogulonicigenium vulgare (strain Y25) RepID=E3F2J6_KETVY rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_1000_bf_scaffold_1907_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26254..27615)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDT0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36513.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Rieske (2Fe-2S) iron-sulfur domain
SCNpilot_expt_1000_bf_scaffold_1907_30
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27976..28308
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00037CB899
2Fe-2S ferredoxin {ECO:0000313|EMBL:EZQ14670.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
putative ferredoxin
Displaying items 1-30 of 34 in total

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