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SCNpilot_expt_1000_bf_scaffold_3512

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3512_1
RIFOXYC2_FULL_Burkholderiales_59_8_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..692)
DNA (690bp) protein (230aa)
Putative nucleoside-diphosphate sugar epimerase n=1 Tax=Herbaspirillum sp. YR522 RepID=J2VLC7_9BURK
polysaccharide biosynthesis protein CapD
Tax=RIFOXYC2_FULL_Burkholderiales_59_8_curated
SCNpilot_expt_1000_bf_scaffold_3512_2
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(788..1900)
DNA (1113bp) protein (371aa)
Glycosyl transferase group 1 n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z8K7_9NEIS
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:EEG06945.1}; Flags: Precursor;; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
SCNpilot_expt_1000_bf_scaffold_3512_3
Deinococcus swuensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(1921..3030)
DNA (1110bp) protein (370aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14); K13019 UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23] rbh
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1DDF0_LARHH rbh
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:AIZ45742.1}; TaxID=1182571 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus swuensis.;"
SCNpilot_expt_1000_bf_scaffold_3512_4
unknown

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comp(3041..3829)
DNA (789bp) protein (263aa)
Glycosyltransferase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WSJ8_9BURK
SCNpilot_expt_1000_bf_scaffold_3512_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4286..5401)
DNA (1116bp) protein (372aa)
aminotransferase DegT n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0B16 rbh
Aminotransferase DegT {ECO:0000313|EMBL:AIL12276.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
erythromycin biosynthesis sensory transduction protein eryC1
SCNpilot_expt_1000_bf_scaffold_3512_6
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5637..6899
DNA (1263bp) protein (421aa)
UDP-N-acetyl-D-glucosamine dehydrogenase n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B73911 rbh
Similar to UDP-glucose/GDP-mannose dehydrogenase {ECO:0000313|EMBL:AAM27657.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
UDP-glucose 6-dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_3512_7
unknown

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comp(6863..7048)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3512_8
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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7078..7734
DNA (657bp) protein (219aa)
Putative methyltransferase {ECO:0000313|EMBL:KHE94012.1}; TaxID=237368 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Scalindua.;" source="Candidatus Scalindua brodae.;"
Methyltransferase family protein id=3588609 bin=GWA2_Ignavibacteria-rel_35_8 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
putative methyltransferase
SCNpilot_expt_1000_bf_scaffold_3512_9
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7772..8902
DNA (1131bp) protein (377aa)
Putative PLP-dependent enzyme possibly involved in cell wall biogenesis n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YHZ4_9BRAD rbh
Putative aminotransferase {ECO:0000313|EMBL:GAO39042.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis rbh
SCNpilot_expt_1000_bf_scaffold_3512_10
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8899..9951
DNA (1053bp) protein (351aa)
pyruvate dehydrogenase (lipoamide) (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YHZ6_9BRAD rbh
Pyruvate dehydrogenase E1 component alpha subunit {ECO:0000313|EMBL:GAO39043.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_expt_1000_bf_scaffold_3512_11
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9948..10928
DNA (981bp) protein (327aa)
pyruvate dehydrogenase (lipoamide) (EC:1.2.4.1); K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] rbh
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YHZ5_9BRAD rbh
Pyruvate dehydrogenase E2 component beta subunit {ECO:0000313|EMBL:GAO39044.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_expt_1000_bf_scaffold_3512_12
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10934..11623
DNA (690bp) protein (230aa)
Glycosyl transferase possibly involved in lipopolysaccharide synthesis n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WSK4_9BURK
Putative glycosyltransferase {ECO:0000313|EMBL:GAO39045.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
lipopolysaccharide synthesis sugar transferase
SCNpilot_expt_1000_bf_scaffold_3512_13
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11630..13573)
DNA (1944bp) protein (648aa)
Uncharacterized protein {ECO:0000313|EMBL:ETR76448.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_expt_1000_bf_scaffold_3512_14
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13682..15010)
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HL29_PSEST
Uncharacterized protein {ECO:0000313|EMBL:EQM72361.1}; TaxID=1333856 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri MF28.;"
O-antigen flippase Wzx
Displaying 14 items

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