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SCNpilot_expt_1000_bf_scaffold_3648

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3648_1
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..993)
DNA (993bp) protein (331aa)
Type 12 methyltransferase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N7M6_9RHIZ rbh
Type 12 methyltransferase {ECO:0000313|EMBL:EKF20103.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
methyltransferase type 12 rbh
SCNpilot_expt_1000_bf_scaffold_3648_2
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1000..2133
DNA (1134bp) protein (378aa)
UPI0003D04614 related cluster n=1 Tax=unknown RepID=UPI0003D04614
Beta-lactamase {ECO:0000313|EMBL:ESZ11761.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein; K07577 putative mRNA 3-end processing factor
SCNpilot_expt_1000_bf_scaffold_3648_3
Rhodobacteraceae bacterium HTCC2150, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2139..2537)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Pseudorhodobacter ferrugineus RepID=UPI0003B4E7A1
Uncharacterized protein {ECO:0000313|EMBL:EBA03864.1}; TaxID=388401 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium HTCC2150.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3648_4
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3087..3710
DNA (624bp) protein (208aa)
ATP-dependent DNA ligase {ECO:0000313|EMBL:EHK52384.1}; EC=6.5.1.1 {ECO:0000313|EMBL:EHK52384.1};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ATP dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F00C92
SCNpilot_expt_1000_bf_scaffold_3648_5
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3722..4234
DNA (513bp) protein (171aa)
ATP-dependent DNA ligase {ECO:0000313|EMBL:EHK52384.1}; EC=6.5.1.1 {ECO:0000313|EMBL:EHK52384.1};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I3Q7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3648_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4212..5381)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TMU5_MESCW
Uncharacterized protein {ECO:0000313|EMBL:CDX36886.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3648_7
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5574..6527
DNA (954bp) protein (318aa)
2-nitropropane dioxygenase (EC:1.13.12.16); K00459 nitronate monooxygenase [EC:1.13.12.16]
2-nitropropane dioxygenase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037907E8 rbh
2-nitropropane dioxygenase {ECO:0000313|EMBL:EKF20112.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_3648_8
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6652..8148
DNA (1497bp) protein (499aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
Two-component sensor protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFP4_PELHB rbh
two-component sensor protein rbh
SCNpilot_expt_1000_bf_scaffold_3648_9
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8145..8591
DNA (447bp) protein (149aa)
Putative response regulator receiver (CheY-like protein) n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JE72_HYPSM
Chemotaxis protein CheY {ECO:0000313|EMBL:KKC34709.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
response regulator receiver (CheY-like protein)
SCNpilot_expt_1000_bf_scaffold_3648_10
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8592..9632
DNA (1041bp) protein (347aa)
CheY-like receiver n=1 Tax=Rhodovulum sp. PH10 RepID=J6UBK0_9RHOB
CheY-like receiver {ECO:0000313|EMBL:EJW10566.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
signal transduction histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_3648_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9705..9830)
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMQ8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28805.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_expt_1000_bf_scaffold_3648_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9843..10472)
DNA (630bp) protein (210aa)
Major facilitator superfamily MFS_1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VB24_9BRAD
Putative MFS-type transporter YhjX {ECO:0000313|EMBL:CEG08586.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
MFS transporter
SCNpilot_expt_1000_bf_scaffold_3648_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10457..11251)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NIC6_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28806.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
Displaying 13 items

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