ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3747

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3747_1
Brucella suis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..384)
DNA (384bp) protein (128aa)
Succinate dehydrogenase hydrophobic membrane anchor n=6 Tax=Brucella RepID=C9T3W2_9RHIZ
succinate dehydrogenase, hydrophobic membrane anchor protein
Succinate dehydrogenase, hydrophobic membrane anchor protein {ECO:0000313|EMBL:ENR21023.1}; TaxID=1160233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella suis 92/29.;"
SCNpilot_expt_1000_bf_scaffold_3747_2
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(393..791)
DNA (399bp) protein (133aa)
Succinate dehydrogenase, cytochrome b556 subunit n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3I6X6_9RHIZ
Succinate dehydrogenase, cytochrome b556 subunit {ECO:0000313|EMBL:EMG55707.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
succinate dehydrogenase, cytochrome b556 subunit; K00241 succinate dehydrogenase cytochrome b556 subunit
SCNpilot_expt_1000_bf_scaffold_3747_3
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1040..1390)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FDA691
Uncharacterized protein {ECO:0000313|EMBL:EKF40525.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_3747_4
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1489..1884)
DNA (396bp) protein (132aa)
DoxX n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DA6_MESSB
DoxX
DoxX {ECO:0000313|EMBL:ABG64619.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_3747_5
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1981..2439)
DNA (459bp) protein (153aa)
Acetyltransferase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CH34_9RHIZ
Acetyltransferase {ECO:0000313|EMBL:EJN05709.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
acetyltransferase
SCNpilot_expt_1000_bf_scaffold_3747_6
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2572..2949
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003825B5B
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58493.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3747_7
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3019..4338
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MPD1_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EKF19132.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3747_8
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4349..5182
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N4N9_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EKF19133.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3747_9
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5196..5777)
DNA (582bp) protein (194aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Uncharacterized peroxidase-related enzyme n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F0D0_9RHIZ
peroxidase-like protein
SCNpilot_expt_1000_bf_scaffold_3747_10
unknown

Not on your lists

comp(6006..6161)
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3747_11
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6678..10682
DNA (4005bp) protein (1335aa)
hypothetical protein; K15371 glutamate dehydrogenase [EC:1.4.1.2] rbh
NAD-glutamate dehydrogenase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LMV8_9RHIZ rbh
NAD-glutamate dehydrogenase {ECO:0000313|EMBL:EKF19109.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_3747_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10784..12175
DNA (1392bp) protein (464aa)
Major facilitator transporter n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLD8_9RHIZ rbh
Major facilitator transporter {ECO:0000313|EMBL:EHK58467.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
major facilitator transporter; K06902 MFS transporter, UMF1 family rbh
SCNpilot_expt_1000_bf_scaffold_3747_13
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12199..13815)
DNA (1617bp) protein (539aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
IMP cyclohydrolase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D8E513
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_expt_1000_bf_scaffold_3747_14
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13755..15572)
DNA (1818bp) protein (606aa)
Heparinase II/III family protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLJ2_9RHIZ
Heparinase II/III family protein {ECO:0000313|EMBL:EHK58390.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
heparinase II/III family protein
SCNpilot_expt_1000_bf_scaffold_3747_15
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15810..17141)
DNA (1332bp) protein (444aa)
MFS transporter n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FA36C2
MFS transporter {ECO:0000313|EMBL:EXL05959.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
tRNA/rRNA cytosine-C5-methylase
SCNpilot_expt_1000_bf_scaffold_3747_16
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17290..18126)
DNA (837bp) protein (279aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
heat shock protein HtpX n=1 Tax=Hoeflea sp. 108 RepID=UPI000368BA29
Zn-dependent protease with chaperone function
SCNpilot_expt_1000_bf_scaffold_3747_17
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18783..19652
DNA (870bp) protein (290aa)
Transglutaminase domain-containing protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLL3_9RHIZ
Transglutaminase domain protein {ECO:0000313|EMBL:CDX42341.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
transglutaminase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3747_18
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19702..20166
DNA (465bp) protein (155aa)
Nuclease (SNase-like) protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLL2_9RHIZ
Nuclease (SNase-like) protein {ECO:0000313|EMBL:EHK58410.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
nuclease (SNase-like)
SCNpilot_expt_1000_bf_scaffold_3747_19
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20490..20777
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036D258E
Uncharacterized protein {ECO:0000313|EMBL:KGD95646.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_3747_20
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20787..21404)
DNA (618bp) protein (206aa)
Lysine exporter protein LysE/YggA n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M990_9RHIZ
Lysine exporter protein LysE/YggA {ECO:0000313|EMBL:EKF18666.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
lysine exporter protein LysE/YggA
SCNpilot_expt_1000_bf_scaffold_3747_21
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21441..23396)
DNA (1956bp) protein (652aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
acetate/CoA ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Acetyl-coenzyme A synthetase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EKI8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3747_22
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23673..23945
DNA (273bp) protein (91aa)
Usg family protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TL17_MESCW
Usg family protein
USG protein {ECO:0000313|EMBL:ESZ25545.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
SCNpilot_expt_1000_bf_scaffold_3747_23
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23942..24289)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S594_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD89371.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3747_24
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24328..24870)
DNA (543bp) protein (181aa)
ATPase associated with various cellular activities AAA_5 n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TM26_MESCW
ATPase AAA
ATPase associated with various cellular activities AAA_5 {ECO:0000313|EMBL:ADV10411.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_3747_25
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25609..26193
DNA (585bp) protein (195aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
5-formyltetrahydrofolate cyclo-ligase; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HM02_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3747_26
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26225..27025
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C758_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM77660.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
metallophosphoesterase; K09769 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3747_27
Mesorhizobium sp. LNJC391B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27107..27862
DNA (756bp) protein (252aa)
UPI0003CDF3DD related cluster n=1 Tax=unknown RepID=UPI0003CDF3DD
Integral membrane protein TerC
Membrane protein {ECO:0000313|EMBL:ESY30278.1}; TaxID=1287273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC391B00.;"
SCNpilot_expt_1000_bf_scaffold_3747_28
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27899..28699)
DNA (801bp) protein (267aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLZ3_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58185.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3747_29
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28889..29638
DNA (750bp) protein (250aa)
PREDICTED: probable transcriptional regulatory protein HAH1-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C19172
hypothetical protein
Probable transcriptional regulatory protein MCHK_5262 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCNpilot_expt_1000_bf_scaffold_3747_30
bacterium YEK0313, Bacteria

Not on your lists

29647..29943
DNA (297bp) protein (99aa)
SelT/selW/selH selenoprotein domain protein containing protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VKJ0_9RHIZ
Rdx family protein {ECO:0000313|EMBL:CEJ15093.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein; K07401 selenoprotein W-related protein
Displaying items 1-30 of 47 in total

View Taxonomy