ggKbase home page

SCNpilot_expt_1000_bf_scaffold_5387

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5387_1
Hyphomonas oceanitis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1061)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PZI1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KDA04378.1}; TaxID=1280953 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas oceanitis SCH89.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5387_2
unknown

Not on your lists

1215..1529
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5387_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1555..2499
DNA (945bp) protein (315aa)
Lysophospholipase L2 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HTM1_9RHIZ
Lysophospholipase L2 {ECO:0000313|EMBL:EHK55999.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
lysophospholipase
SCNpilot_expt_1000_bf_scaffold_5387_4
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2560..4209
DNA (1650bp) protein (550aa)
thiamine pyrophosphate protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] rbh
Thiamine pyrophosphate enzyme-like TPP-binding protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GP5_MESSB rbh
Thiamine pyrophosphate protein {ECO:0000313|EMBL:CDX13336.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
SCNpilot_expt_1000_bf_scaffold_5387_5
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4213..4407)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TM35_MESCW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESZ25631.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
SCNpilot_expt_1000_bf_scaffold_5387_6
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4419..5498)
DNA (1080bp) protein (360aa)
Phenylacetate-CoA oxygenase/reductase subunit PaaK n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BZS5_9RHIZ rbh
Phenylacetate-CoA oxygenase/reductase subunit PaaK {ECO:0000313|EMBL:EKF43432.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
phenylacetate-CoA oxygenase/reductase subunit PaaK; K02613 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
SCNpilot_expt_1000_bf_scaffold_5387_7
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6067..6834)
DNA (768bp) protein (256aa)
phenylacetate-CoA oxygenase, PaaI subunit; K02611 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
Phenylacetate-CoA oxygenase subunit PaaI n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BZS3_9RHIZ rbh
Phenylacetate-CoA oxygenase subunit PaaI {ECO:0000313|EMBL:EIM75075.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
SCNpilot_expt_1000_bf_scaffold_5387_8
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6834..7121)
DNA (288bp) protein (96aa)
Phenylacetate-CoA oxygenase subunit PaaB n=1 Tax=Nitratireductor indicus C115 RepID=K2NVQ8_9RHIZ
Phenylacetate-CoA oxygenase subunit PaaB {ECO:0000313|EMBL:EKF43435.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
paaB; phenylacetate-CoA oxygenase subunit PaaB; K02610 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB
SCNpilot_expt_1000_bf_scaffold_5387_9
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7127..8122)
DNA (996bp) protein (332aa)
paaA; Phenylacetate-CoA oxygenase, PaaA subunit; K02609 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] rbh
Phenylacetate-CoA oxygenase subunit PaaA n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LSN4_9RHIZ rbh
Phenylacetate-CoA oxygenase subunit PaaA {ECO:0000313|EMBL:EKF20759.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_5387_10
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8222..8641
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PQX2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF43437.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5387_11
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8638..9648)
DNA (1011bp) protein (337aa)
Phenylacetic acid degradation operon negative regulatory protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C4I8_9RHIZ rbh
Phenylacetic acid degradation operon negative regulatory protein {ECO:0000313|EMBL:EIM76740.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
PaaX family transcriptional regulator; K02616 phenylacetic acid degradation operon negative regulatory protein
SCNpilot_expt_1000_bf_scaffold_5387_12
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9672..10325
DNA (654bp) protein (218aa)
UPI0003CFE1DE related cluster n=1 Tax=unknown RepID=UPI0003CFE1DE rbh
Membrane protein {ECO:0000313|EMBL:ESZ12458.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
integral membrane protein, YjbE family
SCNpilot_expt_1000_bf_scaffold_5387_13
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10340..10951)
DNA (612bp) protein (204aa)
TetR family transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MF40_9RHIZ
TetR family transcriptional regulator {ECO:0000313|EMBL:EKF20731.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5387_14
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10957..11595)
DNA (639bp) protein (213aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
paaF; phenylacetate-CoA ligase; K01912 phenylacetate-CoA ligase [EC:6.2.1.30]
Phenylacetate-CoA ligase n=1 Tax=Nitratireductor indicus C115 RepID=K2NZT6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5387_15
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12290..12721)
DNA (432bp) protein (144aa)
phenylacetic acid degradation protein PaaD; K02614 acyl-CoA thioesterase [EC:3.1.2.-]
Phenylacetic acid degradation protein PaaD n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N9C6_9RHIZ
Phenylacetic acid degradation protein PaaD {ECO:0000313|EMBL:EKF20733.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_5387_16
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12820..14847
DNA (2028bp) protein (676aa)
Bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C4J2_9RHIZ rbh
Bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase {ECO:0000313|EMBL:EIM76744.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
paaZ; phenylacetic acid degradation protein PaaZ rbh
SCNpilot_expt_1000_bf_scaffold_5387_17
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14852..16024)
DNA (1173bp) protein (391aa)
major facilitator transporter n=1 Tax=Pseudomonas sp. CBZ-4 RepID=UPI000346FFAC
Drug resistance transporter, Bcr/CflA subfamily {ECO:0000313|EMBL:EFQ63095.1}; TaxID=746360 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens WH6.;"
Bcr/CflA family multidrug resistance transporter
SCNpilot_expt_1000_bf_scaffold_5387_18
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16021..17091)
DNA (1071bp) protein (357aa)
3-carboxy-cis,cis-muconate cycloisomerase; K01857 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] rbh
3-carboxy-cis,cis-muconate cycloisomerase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GN0_MESSB rbh
3-carboxy-cis,cis-muconate cycloisomerase {ECO:0000313|EMBL:ABG63445.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_5387_19
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17247..17861)
DNA (615bp) protein (205aa)
pcaG; protocatechuate 3,4-dioxygenase subunit alpha; K00448 protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
Protocatechuate 3,4-dioxygenase, alpha subunit n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F7C2_9RHIZ rbh
Protocatechuate 3,4-dioxygenase, alpha subunit {ECO:0000313|EMBL:EHS51314.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_expt_1000_bf_scaffold_5387_20
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17864..17995)
DNA (132bp) protein (44aa)
protocatechuate 3,4-dioxygenase subunit beta; K00449 protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
Protocatechuate 3,4-dioxygenase, beta subunit n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GN2_MESSB
Protocatechuate 3,4-dioxygenase, beta subunit {ECO:0000313|EMBL:EJM99507.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
Displaying 20 items

View Taxonomy