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SCNpilot_expt_1000_bf_scaffold_4282

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4282_1
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..510
DNA (510bp) protein (170aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
pyrG; CTP synthetase; K01937 CTP synthase [EC:6.3.4.2]
CTP synthetase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036118A4
SCNpilot_expt_1000_bf_scaffold_4282_2
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(507..806)
DNA (300bp) protein (100aa)
Plasmid stabilization system protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NTJ8_AZOS1
Plasmid stabilization protein {ECO:0000313|EMBL:KGD92011.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
plasmid stabilization system protein
SCNpilot_expt_1000_bf_scaffold_4282_3
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(803..1054)
DNA (252bp) protein (84aa)
Putative addiction module antidote protein,CopG/Arc/MetJ family n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q5S3_9RHIZ
Addiction module antitoxin {ECO:0000313|EMBL:KGD92010.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
addiction module antidote protein; K07746 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4282_4
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1113..1829)
DNA (717bp) protein (239aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
methionine sulfoxide reductase A (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
methionine sulfoxide reductase A n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003707A21
SCNpilot_expt_1000_bf_scaffold_4282_5
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1940..2551)
DNA (612bp) protein (204aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6); K00684 leucyl/phenylalanyl-tRNA--protein transferase [EC:2.3.2.6]
leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Rhizobium loti RepID=UPI00036988AA
SCNpilot_expt_1000_bf_scaffold_4282_6
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2570..3910)
DNA (1341bp) protein (447aa)
Acetyl-CoA carboxylase biotin carboxylase subunit {ECO:0000313|EMBL:EHH12778.1}; EC=6.4.1.2 {ECO:0000313|EMBL:EHH12778.1};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
acetyl-CoA carboxylase biotin carboxylase subunit (EC:6.4.1.2); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Acetyl-CoA carboxylase biotin carboxylase subunit n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y610_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4282_7
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3919..4362)
DNA (444bp) protein (148aa)
Acetyl-CoA carboxylase biotin carboxyl carrier protein subunit {ECO:0000313|EMBL:EHH12777.1}; EC=6.4.1.2 {ECO:0000313|EMBL:EHH12777.1};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
Acetyl-CoA carboxylase biotin carboxyl carrier protein subunit n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y609_9RHIZ
acetyl-CoA carboxylase, biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
SCNpilot_expt_1000_bf_scaffold_4282_8
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4494..4931)
DNA (438bp) protein (146aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
3-dehydroquinate dehydratase, type II (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FAH9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4282_9
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5074..5886)
DNA (813bp) protein (271aa)
UPI0003CEA662 related cluster n=1 Tax=unknown RepID=UPI0003CEA662
DSBA oxidoreductase {ECO:0000313|EMBL:ESW92876.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
DSBA oxidoreductase
SCNpilot_expt_1000_bf_scaffold_4282_10
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5968..7371)
DNA (1404bp) protein (468aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035CE576
Peptidase M48, Ste24p {ECO:0000313|EMBL:EKF42702.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4282_11
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7510..8658
DNA (1149bp) protein (383aa)
1-aminocyclopropane-1-carboxylate deaminase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FRF3_9RHIZ
1-aminocyclopropane-1-carboxylate deaminase {ECO:0000313|EMBL:ESX82127.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
class I and II aminotransferase
SCNpilot_expt_1000_bf_scaffold_4282_12
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8669..9502
DNA (834bp) protein (278aa)
sugar phosphate isomerase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003638916 rbh
Sugar phosphate isomerase {ECO:0000313|EMBL:KKB12463.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4282_13
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9513..9872)
DNA (360bp) protein (120aa)
rne; ribonuclease E; K08300 ribonuclease E [EC:3.1.26.12]
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
Ribonuclease E n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IXF7_POLGS
SCNpilot_expt_1000_bf_scaffold_4282_14
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10601..11746
DNA (1146bp) protein (382aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QN20_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP07439.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4282_15
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11780..12190
DNA (411bp) protein (137aa)
Ribonuclease E n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DFY8_BRAJP
ribonuclease E
Ribonuclease E {ECO:0000313|EMBL:BAL10762.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_expt_1000_bf_scaffold_4282_16
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12926..14194
DNA (1269bp) protein (423aa)
cell wall hydrolase/autolysin; K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HW92_9RHIZ
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EHK54935.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_4282_17
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14400..16802
DNA (2403bp) protein (801aa)
UPI0003CEB45E related cluster n=1 Tax=unknown RepID=UPI0003CEB45E
Penicillin-binding protein 1A {ECO:0000313|EMBL:ESW77426.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
penicillin-binding protein, 1A family
SCNpilot_expt_1000_bf_scaffold_4282_18
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16796..17554)
DNA (759bp) protein (253aa)
ABC transporter permease n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C582_9RHIZ rbh
ABC transporter permease {ECO:0000313|EMBL:EIM76984.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease component rbh
SCNpilot_expt_1000_bf_scaffold_4282_19
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17566..18498)
DNA (933bp) protein (311aa)
Oligopeptide transport system permease oppB n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C583_9RHIZ rbh
Oligopeptide transport system permease oppB {ECO:0000313|EMBL:EIM76985.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease component rbh
SCNpilot_expt_1000_bf_scaffold_4282_20
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18509..19009)
DNA (501bp) protein (167aa)
Oligopeptide-binding protein OppA n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U9W9_RHIRD
Oligopeptide-binding protein OppA {ECO:0000313|EMBL:EGP57115.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, substrate binding component
SCNpilot_expt_1000_bf_scaffold_4282_21
unknown

Not on your lists

19533..19976
DNA (444bp) protein (148aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4282_22
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19990..20814)
DNA (825bp) protein (275aa)
NADH dehydrogenase (ubiquinone) flavoprotein 2 (EC:1.6.99.3)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000360E5F3 rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM76987.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
SCNpilot_expt_1000_bf_scaffold_4282_23
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21400..22422
DNA (1023bp) protein (341aa)
peptide chain release factor 2 n=1 Tax=Rhizobium loti RepID=UPI00037D5DD1
peptide chain release factor 2; K02836 peptide chain release factor 2
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
SCNpilot_expt_1000_bf_scaffold_4282_24
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22431..22907
DNA (477bp) protein (159aa)
ATPase n=1 Tax=Rhizobium gallicum RepID=UPI00037D6F98
activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ACI55116.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_4282_25
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22904..24172)
DNA (1269bp) protein (423aa)
Peptidase M23 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HS73_9RHIZ rbh
Peptidase M23 {ECO:0000313|EMBL:EHK56402.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
peptidase M23 rbh
SCNpilot_expt_1000_bf_scaffold_4282_26
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24288..25463)
DNA (1176bp) protein (392aa)
bcp3; peroxiredoxin Q/BCP; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Bacterioferritin comigratory protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HS72_9RHIZ
Bacterioferritin comigratory protein {ECO:0000313|EMBL:EHK56401.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_4282_27
unknown

Not on your lists

comp(25769..25975)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4282_28
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26312..28243
DNA (1932bp) protein (644aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YFK9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX11768.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4282_29
unknown

Not on your lists

28243..28455
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4282_30
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28456..29709)
DNA (1254bp) protein (418aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1] rbh
Tyrosine--tRNA ligase n=2 Tax=Rhizobium etli RepID=Q2K7Z8_RHIEC rbh
Displaying 30 items

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