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SCNpilot_expt_1000_bf_scaffold_8226

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8226_1
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1290)
DNA (1290bp) protein (430aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVD3_RHITR rbh
branched-chain amino acid ABC transporter, permease protein rbh
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AGB75258.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_8226_2
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1292..2155)
DNA (864bp) protein (288aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LYP1_RHITR rbh
branched-chain amino acid ABC transporter, permease protein rbh
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AGB75259.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_8226_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2134..3000)
DNA (867bp) protein (289aa)
Branched-chain amino acid ABC transporter, substrate-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LYT0_RHITR
branched-chain amino acid ABC transporter, substrate-binding protein
Branched-chain amino acid ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AGB75260.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_8226_4
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3556..3891)
DNA (336bp) protein (112aa)
3-carboxy-cis,cis-muconate cycloisomerase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UW90_9RHIZ
3-carboxy-cis,cis-muconate cycloisomerase protein {ECO:0000313|EMBL:ENN85016.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
pcaB; 3-carboxy-cis,cis-muconate cycloisomerase
SCNpilot_expt_1000_bf_scaffold_8226_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3888..4625)
DNA (738bp) protein (246aa)
3-carboxy-cis,cis-muconate cycloisomerase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LX25_RHITR rbh
pcaB; 3-carboxy-cis,cis-muconate cycloisomerase rbh
3-carboxy-cis,cis-muconate cycloisomerase {ECO:0000313|EMBL:AGB75261.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_8226_6
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4629..4856)
DNA (228bp) protein (76aa)
Protocatechuate 3,4-dioxygenase, alpha subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UTH6_9RHIZ
Protocatechuate 3,4-dioxygenase, alpha subunit {ECO:0000313|EMBL:ENN85015.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
pcaG; protocatechuate 3,4-dioxygenase, alpha subunit
SCNpilot_expt_1000_bf_scaffold_8226_7
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5218..5967)
DNA (750bp) protein (250aa)
Protocatechuate 3,4-dioxygenase beta chain n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TX76_9RHIZ rbh
Protocatechuate 3,4-dioxygenase beta chain {ECO:0000313|EMBL:ENN85014.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
pcaH; protocatechuate 3,4-dioxygenase, beta subunit rbh
SCNpilot_expt_1000_bf_scaffold_8226_8
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5980..6384)
DNA (405bp) protein (135aa)
Gamma-carboxymuconolactone decarboxylase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U3Z8_9RHIZ
Gamma-carboxymuconolactone decarboxylase protein {ECO:0000313|EMBL:ENN85013.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
pcaC; 4-carboxymuconolactone decarboxylase
SCNpilot_expt_1000_bf_scaffold_8226_9
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6381..7190)
DNA (810bp) protein (270aa)
Beta-ketoadipate enol-lactone hydrolase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V1M6_9RHIZ rbh
Beta-ketoadipate enol-lactone hydrolase protein {ECO:0000313|EMBL:ENN85012.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
pcaD; 3-oxoadipate enol-lactonase rbh
SCNpilot_expt_1000_bf_scaffold_8226_10
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7285..8211
DNA (927bp) protein (309aa)
Transcriptional regulator PcaQ n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LX30_RHITR rbh
pcaQ; transcriptional regulator PcaQ rbh
Transcriptional regulator PcaQ {ECO:0000313|EMBL:AGB75266.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_8226_11
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8219..9370)
DNA (1152bp) protein (384aa)
4-hydroxybenzoate hydroxylase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UTG8_9RHIZ rbh
pobA; 4-hydroxybenzoate 3-monooxygenase rbh
4-hydroxybenzoate hydroxylase {ECO:0000313|EMBL:ENN85010.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_8226_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9483..9782
DNA (300bp) protein (100aa)
Regulatory protein PobR n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LYU0_RHITR
pobR; regulatory protein PobR
Regulatory protein PobR {ECO:0000313|EMBL:AGB75270.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_8226_13
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9842..10360
DNA (519bp) protein (173aa)
Putative AraC family transcriptional regulator for P-hydroxybenzoate hydroxylase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TX70_9RHIZ rbh
pobR; regulatory protein PobR rbh
Putative AraC family transcriptional regulator for P-hydroxybenzoate hydroxylase {ECO:0000313|EMBL:ENN85009.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_8226_14
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10364..11080)
DNA (717bp) protein (239aa)
Transcriptional regulator protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U3Z0_9RHIZ rbh
Transcriptional regulator protein {ECO:0000313|EMBL:ENN85008.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
pcaR; beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family rbh
SCNpilot_expt_1000_bf_scaffold_8226_15
unknown

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comp(11542..11781)
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8226_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12066..12356
DNA (291bp) protein (97aa)
3-oxoadipate CoA-transferase subunit B n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVE9_RHITR
pcaJ; 3-oxoadipate CoA-transferase subunit B
3-oxoadipate CoA-transferase subunit B {ECO:0000313|EMBL:AGB75273.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying 16 items

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