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SCNpilot_expt_1000_bf_scaffold_13497

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_13497_1
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..482)
DNA (480bp) protein (160aa)
Choline dehydrogenase protein {ECO:0000313|EMBL:AJD44296.1}; EC=1.1.99.1 {ECO:0000313|EMBL:AJD44296.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
Choline dehydrogenase (EC:1.1.99.1); K00108 choline dehydrogenase [EC:1.1.99.1]
sorbose dehydrogenase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000362A8E4
SCNpilot_expt_1000_bf_scaffold_13497_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(504..1394)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003638F24 rbh
Aldose 1-epimerase rbh
Aldose 1-epimerase {ECO:0000313|EMBL:ACS61001.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_13497_3
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1403..2407)
DNA (1005bp) protein (335aa)
sugar ABC transporter permease n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003700CEF rbh
Sugar ABC transporter permease protein {ECO:0000313|EMBL:AJD44294.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_13497_4
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2419..2796)
DNA (378bp) protein (126aa)
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJD44293.1}; EC=3.6.3.17 {ECO:0000313|EMBL:AJD44293.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
heme ABC transporter ATP-binding protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035CD53E
SCNpilot_expt_1000_bf_scaffold_13497_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4009..4872)
DNA (864bp) protein (288aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037CD16D rbh
periplasmic binding protein/LacI transcriptional regulator; K02058 simple sugar transport system substrate-binding protein rbh
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:ACS61004.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_13497_6
unknown

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comp(4999..5178)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_13497_7
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5280..6053
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00037794C0 rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:EPE94219.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
GntR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_13497_8
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6156..7133)
DNA (978bp) protein (326aa)
LolC/E family lipoprotein releasing system, transmembrane protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LR49_9RHIZ
LolC/E family lipoprotein releasing system, transmembrane protein {ECO:0000313|EMBL:EKF20189.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
LolC/E family lipoprotein releasing system, transmembrane protein; K09808 lipoprotein-releasing system permease protein
SCNpilot_expt_1000_bf_scaffold_13497_9
unknown

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comp(7419..7751)
DNA (333bp) protein (111aa)

This feature has no annotations

Displaying 9 items

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