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SCNpilot_expt_1000_bf_scaffold_4392

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4392_1
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1130)
DNA (1128bp) protein (376aa)
Pilus assembly protein CpaE n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHX6_RHITR rbh
cpaE; pilus assembly protein CpaE rbh
Pilus assembly protein CpaE {ECO:0000313|EMBL:AGB69689.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4392_2
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1162..1941)
DNA (780bp) protein (260aa)
Pilus assembly protein CpaD n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LE87_RHITR rbh
cpaD; pilus assembly protein CpaD rbh
Pilus assembly protein CpaD {ECO:0000313|EMBL:AGB69688.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4392_3
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1953..3485)
DNA (1533bp) protein (511aa)
Pilus assembly secretion protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V0E6_9RHIZ rbh
Pilus assembly secretion protein {ECO:0000313|EMBL:ENN84572.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
cpaC; pilus assembly protein CpaC rbh
SCNpilot_expt_1000_bf_scaffold_4392_4
unknown

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3683..3958
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4392_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4054..4338)
DNA (285bp) protein (95aa)
Pilus assembly protein CpaB n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LG69_RHITR
cpaB; pilus assembly protein CpaB
Pilus assembly protein CpaB {ECO:0000313|EMBL:AGB69686.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4392_6
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4503..5015)
DNA (513bp) protein (171aa)
cpaA; prepilin peptidase; K02278 prepilin peptidase CpaA [EC:3.4.23.43]
Putative pilus assembly protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6USC2_9RHIZ
Putative pilus assembly protein {ECO:0000313|EMBL:ENN84570.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_4392_7
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5108..5290)
DNA (183bp) protein (61aa)
Flp pilus assembly protein, pilin Flp n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TVY0_9RHIZ
Flp pilus assembly protein, pilin Flp {ECO:0000313|EMBL:ENN84569.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
pilA; component of type IV pilus; K02651 pilus assembly protein Flp/PilA
SCNpilot_expt_1000_bf_scaffold_4392_8
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5695..6123
DNA (429bp) protein (143aa)
Putative type IV pilus biogenesis and competence protein PilQ n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LE83_RHITR
pilQ; putative type IV pilus biogenesis and competence protein PilQ
Putative type IV pilus biogenesis and competence protein PilQ {ECO:0000313|EMBL:AGB69683.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4392_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6278..6913
DNA (636bp) protein (212aa)
TadE family protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LEV8_RHITR rbh
TadE family protein rbh
TadE family protein {ECO:0000313|EMBL:AGB69682.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4392_10
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6910..7500
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LG66_RHITR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGB69681.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4392_11
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7636..8856
DNA (1221bp) protein (407aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Phosphopentomutase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LI02_RHITR rbh
deoB; phosphopentomutase rbh
SCNpilot_expt_1000_bf_scaffold_4392_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8853..9821
DNA (969bp) protein (323aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01962}; Short=ADE {ECO:0000256|HAMAP-Rule:MF_01962};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01962};; Adenine aminohydrolase {ECO:0000256|HAMAP-Rule:MF_01962}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Adenosine deaminase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHW5_RHITR rbh
add; adenosine deaminase rbh
SCNpilot_expt_1000_bf_scaffold_4392_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9943..10572
DNA (630bp) protein (210aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Uracil phosphoribosyltransferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LE79_RHITR rbh
upp; uracil phosphoribosyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_4392_14
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10674..11192
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LEV4_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB69677.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_4392_15
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11241..11498)
DNA (258bp) protein (86aa)
deoA; thymidine phosphorylase; K00758 thymidine phosphorylase [EC:2.4.2.4]
Thymidine phosphorylase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UUZ2_9RHIZ
Thymidine phosphorylase {ECO:0000313|EMBL:ENN84561.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Displaying 15 items

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