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SCNpilot_expt_1000_bf_scaffold_1036

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1036_1
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(346..5088)
DNA (4743bp) protein (1581aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDM3_ACISJ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABM44348.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1036_2

Not on your lists

comp(5092..5484)
DNA (393bp) protein (131aa)
Conjugal transfer protein n=2 Tax=Bacteria RepID=A1WDT6_ACISJ
conjugal transfer protein
TraD protein {ECO:0000313|EMBL:CAD24391.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_1036_3
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5509..7572)
DNA (2064bp) protein (688aa)
DNA topoisomerase III (EC:5.99.1.2); K03169 DNA topoisomerase III [EC:5.99.1.2] rbh
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
DNA topoisomerase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDT5_ACISJ rbh
SCNpilot_expt_1000_bf_scaffold_1036_4
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7587..8123)
DNA (537bp) protein (179aa)
Conjugation peptidase TraF. Serine peptidase. MEROPS family S26C n=3 Tax=Bacteria RepID=A1WDT4_ACISJ rbh
conjugal transfer peptidase TraF rbh
Conjugation peptidase TraF. Serine peptidase. MEROPS family S26C {ECO:0000313|EMBL:ABM44409.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1036_5
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8120..10024)
DNA (1905bp) protein (635aa)
TRAG family protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDT3_ACISJ rbh
TRAG family protein {ECO:0000313|EMBL:ABM44408.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4 rbh
SCNpilot_expt_1000_bf_scaffold_1036_6
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10021..10296)
DNA (276bp) protein (92aa)
Putative entry/exclusion protein TrbK n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDT2_ACISJ
putative entry/exclusion protein TrbK
Putative entry/exclusion protein TrbK {ECO:0000313|EMBL:ABM44407.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1036_7
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10293..12551)
DNA (2259bp) protein (753aa)
Relaxase/mobilization nuclease family protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDT1_ACISJ rbh
Relaxase/mobilization nuclease family protein {ECO:0000313|EMBL:ABM44406.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
conjugal transfer relaxase TraI rbh
SCNpilot_expt_1000_bf_scaffold_1036_8

Not on your lists

comp(12586..12957)
DNA (372bp) protein (124aa)
TraJ protein of DNA transfer system n=2 Tax=Bacteria RepID=A1WDT0_ACISJ
conjugal transfer relaxosome component TraJ
DNA processing protein {ECO:0000313|EMBL:AFR43970.1}; DNA processing protein, oriT recognizing protein {ECO:0000313|EMBL:AFR43767.1}; TraJ DNA processing protein, oriT recognizing protein {ECO:0000313|EMBL:AFR43817.1}; TraJ protein {ECO:0000313|EMBL:CAD24398.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_1036_9
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12962..13183)
DNA (222bp) protein (74aa)
Uncharacterized protein n=5 Tax=Burkholderiales RepID=A1WDS9_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EYS85033.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
SCNpilot_expt_1000_bf_scaffold_1036_10

Not on your lists

13546..13965
DNA (420bp) protein (140aa)
TraK protein of DNA transfer system n=2 Tax=Bacteria RepID=A1WDS8_ACISJ
TraK protein of DNA transfer system
DNA processing protein, oriT binding protein {ECO:0000313|EMBL:AFR43768.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_1036_11
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13965..14690
DNA (726bp) protein (242aa)
Transfer origin protein, TraL n=4 Tax=Bacteria RepID=A1WDS7_ACISJ rbh
conjugal transfer protein TraL rbh
Transfer origin protein, TraL {ECO:0000313|EMBL:ABM44402.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1036_12
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14690..15130
DNA (441bp) protein (147aa)
TraM protein n=4 Tax=Bacteria RepID=A1WDS6_ACISJ
conjugal transfer protein TraM
TraM protein {ECO:0000313|EMBL:ABM44401.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1036_13
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15326..15964)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDS5_ACISJ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABM44400.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1036_14
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15994..16341)
DNA (348bp) protein (116aa)
Putative conjugation protein TraO n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDS4_ACISJ
putative conjugation protein TraO
Putative conjugation protein TraO {ECO:0000313|EMBL:ABM44399.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1036_15
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16512..17519)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDS3_ACISJ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABM44398.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1036_16
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17721..18788)
DNA (1068bp) protein (356aa)
ParB family protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDS2_ACISJ rbh
ParB family protein; K03497 chromosome partitioning protein, ParB family rbh
ParB family protein {ECO:0000313|EMBL:ABM44397.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1036_17
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18785..19549)
DNA (765bp) protein (255aa)
Cobyrinic acid a,c-diamide synthase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDS1_ACISJ rbh
cobyrinic acid a,c-diamide synthase; K03496 chromosome partitioning protein rbh
Cobyrinic acid a,c-diamide synthase {ECO:0000313|EMBL:ABM44396.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1036_18
Sphingomonas sp. A1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19546..19854)
DNA (309bp) protein (103aa)
KorA n=3 Tax=Bacteria RepID=G9C9R8_DELAC
KorA {ECO:0000313|EMBL:BAE19720.1}; TaxID=90322 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. A1.;"
korA; TrfB transcriptional repressor
SCNpilot_expt_1000_bf_scaffold_1036_19
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19961..20290)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDS0_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM44395.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1036_20
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20293..20619)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDR9_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM44394.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1036_21
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20828..21064)
DNA (237bp) protein (79aa)
Uncharacterized protein n=7 Tax=Bacteria RepID=A1WDR8_ACISJ
kleA; KleA protein
Protein kleA {ECO:0000313|EMBL:KDP87012.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
SCNpilot_expt_1000_bf_scaffold_1036_22
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21221..21478)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDR7_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM44392.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1036_23
Sphingomonas sp. A1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21495..21692)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDR6_ACISJ
hypothetical protein
KlcB {ECO:0000313|EMBL:BAE19725.2}; KlcB' protein {ECO:0000313|EMBL:BAE48730.1}; TaxID=90322 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. A1.;"
SCNpilot_expt_1000_bf_scaffold_1036_24
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21644..22678)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDR6_ACISJ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABM44391.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1036_25
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22690..22953)
DNA (264bp) protein (88aa)
Uncharacterized protein n=13 Tax=Bacteria RepID=Q46M75_CUPPJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO20194.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_1000_bf_scaffold_1036_26
Sphingomonas sp. A1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22953..23384)
DNA (432bp) protein (144aa)
Antirestriction protein n=2 Tax=Proteobacteria RepID=A1WDR4_ACISJ
antirestriction protein
KlcA' protein {ECO:0000313|EMBL:BAE48731.1}; TaxID=90322 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. A1.;"
SCNpilot_expt_1000_bf_scaffold_1036_27
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23555..23818
DNA (264bp) protein (88aa)
Addiction module antitoxin, RelB/DinJ family n=15 Tax=Bacteria RepID=A1WDR3_ACISJ
addiction module antitoxin; K07473 DNA-damage-inducible protein J
Addiction module antitoxin, RelB/DinJ family protein {ECO:0000313|EMBL:ADP19907.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_expt_1000_bf_scaffold_1036_28
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23805..24086
DNA (282bp) protein (94aa)
Addiction module toxin, RelE/StbE family n=2 Tax=Bacteria RepID=A1WDR2_ACISJ
addiction module antitoxin
Addiction module toxin, RelE/StbE family {ECO:0000313|EMBL:ABM44387.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Displaying 28 items

View Taxonomy